miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 307 0.66 0.958131
Target:  5'- --cGCCGGgcccGCCCCAcccccacgcgcGCGCCgcCGAc -3'
miRNA:   3'- cauCGGCCaua-UGGGGU-----------UGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 8076 0.66 0.961678
Target:  5'- -aAGaCGGUGUuCCCCAugGCCa--- -3'
miRNA:   3'- caUCgGCCAUAuGGGGUugCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 10230 0.67 0.916031
Target:  5'- uUAGCaGGUG-ACCCCGcCGUCUCGu -3'
miRNA:   3'- cAUCGgCCAUaUGGGGUuGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 14209 0.67 0.916031
Target:  5'- --cGCUGGcc-GCCCCAACGCCa--- -3'
miRNA:   3'- cauCGGCCauaUGGGGUUGCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 14636 0.67 0.921637
Target:  5'- -gGGCCGGgcacggagACgCCGGCGCCgCGGc -3'
miRNA:   3'- caUCGGCCaua-----UGgGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 17583 0.67 0.937053
Target:  5'- ---aCCGGacccgacGCCaCCGACGCCUCGGu -3'
miRNA:   3'- caucGGCCaua----UGG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 18727 0.7 0.805974
Target:  5'- -gAGCCGacgagccGCCCCAACGCCaCGAc -3'
miRNA:   3'- caUCGGCcaua---UGGGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 19547 0.74 0.58146
Target:  5'- --cGCCGGUGUcggACCCgGACuGCUUCGAg -3'
miRNA:   3'- cauCGGCCAUA---UGGGgUUG-CGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 24010 0.7 0.814648
Target:  5'- -gGGCCGccGUcACCgCGGCGCCUCGGc -3'
miRNA:   3'- caUCGGCcaUA-UGGgGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 31533 0.67 0.937053
Target:  5'- --uGCgCGGcgaGCCCCGACGUCUcCGAg -3'
miRNA:   3'- cauCG-GCCauaUGGGGUUGCGGA-GCU- -5'
11084 5' -55.3 NC_002794.1 + 36442 0.66 0.941725
Target:  5'- aGgcGCCGGagcUGCUCUuugAACGUCUCGAa -3'
miRNA:   3'- -CauCGGCCau-AUGGGG---UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 37777 0.68 0.884556
Target:  5'- -cGGCCGucgucGUcgGCCgCAgGCGCCUCGAc -3'
miRNA:   3'- caUCGGC-----CAuaUGGgGU-UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 37996 0.68 0.900373
Target:  5'- -cAGCCGGgccacgccguagGCCUgCAGCGCUUCGGg -3'
miRNA:   3'- caUCGGCCaua---------UGGG-GUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 39467 0.76 0.483934
Target:  5'- gGUGGCCGGgcucUACCUCAuCGuCCUCGAa -3'
miRNA:   3'- -CAUCGGCCau--AUGGGGUuGC-GGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 45022 0.68 0.891303
Target:  5'- cGUGGCCGGgugcuccGCaCCCAGCGCgguggCGAg -3'
miRNA:   3'- -CAUCGGCCaua----UG-GGGUUGCGga---GCU- -5'
11084 5' -55.3 NC_002794.1 + 55414 0.66 0.958131
Target:  5'- -cGGCCGaGgcgACCCCGGCGUCcgCGu -3'
miRNA:   3'- caUCGGC-CauaUGGGGUUGCGGa-GCu -5'
11084 5' -55.3 NC_002794.1 + 63081 0.68 0.904124
Target:  5'- -gGGCCGGcUGUACUUCAGCGCgCUg-- -3'
miRNA:   3'- caUCGGCC-AUAUGGGGUUGCG-GAgcu -5'
11084 5' -55.3 NC_002794.1 + 63633 0.66 0.953194
Target:  5'- -cGGCCGagcaccucgucugcGUG-ACCgCCAACGUCUCGGa -3'
miRNA:   3'- caUCGGC--------------CAUaUGG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 63934 0.68 0.884556
Target:  5'- -cGGCCGGcgagucucgAgUCCGACGCCUCGc -3'
miRNA:   3'- caUCGGCCaua------UgGGGUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 65361 0.66 0.958131
Target:  5'- gGgcGCCGGc--GCCCUGACGCCacaCGGc -3'
miRNA:   3'- -CauCGGCCauaUGGGGUUGCGGa--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.