miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 67335 0.68 0.884556
Target:  5'- --cGCCaGG-GUGCCCCGGCGCCg--- -3'
miRNA:   3'- cauCGG-CCaUAUGGGGUUGCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 68945 0.66 0.95038
Target:  5'- -gGGCCGcg--GCgCCGGCGCCUCu- -3'
miRNA:   3'- caUCGGCcauaUGgGGUUGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 70512 0.66 0.952001
Target:  5'- -gAGCCGGUccaGCCCgugcucguaaugaaaCAgcagccgaucguGCGCCUCGAg -3'
miRNA:   3'- caUCGGCCAua-UGGG---------------GU------------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 72174 0.66 0.961678
Target:  5'- --uGCCGGUAgGCCgCgAACGCUUUGc -3'
miRNA:   3'- cauCGGCCAUaUGG-GgUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 72565 0.66 0.952001
Target:  5'- -cGGCCGGgaagaGCCCgcccaacagcgcguuCAGCGCgUCGAa -3'
miRNA:   3'- caUCGGCCaua--UGGG---------------GUUGCGgAGCU- -5'
11084 5' -55.3 NC_002794.1 + 74386 0.68 0.891303
Target:  5'- -cGGCCGGcgcgacUACacgaCCgAGCGCCUCGAc -3'
miRNA:   3'- caUCGGCCau----AUGg---GG-UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 77010 0.66 0.954367
Target:  5'- ---aCCGGgAUGCCgCCGGCGCacCUCGAc -3'
miRNA:   3'- caucGGCCaUAUGG-GGUUGCG--GAGCU- -5'
11084 5' -55.3 NC_002794.1 + 79283 0.7 0.823159
Target:  5'- -cGGCCGcGUcuuuuccugcGUGgCCgAGCGCCUCGAu -3'
miRNA:   3'- caUCGGC-CA----------UAUgGGgUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 82187 0.66 0.95038
Target:  5'- -aAGcCCGGgc-GCCCCgAGCGCC-CGGc -3'
miRNA:   3'- caUC-GGCCauaUGGGG-UUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 82457 0.7 0.814648
Target:  5'- -cGGUCGGcccgACCUCGACGCCgUCGGc -3'
miRNA:   3'- caUCGGCCaua-UGGGGUUGCGG-AGCU- -5'
11084 5' -55.3 NC_002794.1 + 85013 0.66 0.957765
Target:  5'- --cGCuCGG-GUGCCCCGGgcccacgcucgggUGCCUCGGg -3'
miRNA:   3'- cauCG-GCCaUAUGGGGUU-------------GCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 86143 0.71 0.779063
Target:  5'- -gAGCCGGgacggAUGCUCCGggccACGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86191 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86239 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86287 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCccgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86335 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86383 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86431 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86503 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86551 0.71 0.750994
Target:  5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.