miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 86599 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 86647 0.68 0.904124
Target:  5'- -gAGCCGGgacggAUGCUCCGGCccgaGCC-CGAc -3'
miRNA:   3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 94608 0.71 0.750994
Target:  5'- --uGCUGGUGgacucgGCCCCGuucaagaggaACGCCUUGAc -3'
miRNA:   3'- cauCGGCCAUa-----UGGGGU----------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 96729 0.66 0.961678
Target:  5'- -gAGCCGGcgacgACCgCCGGCGCgUCu- -3'
miRNA:   3'- caUCGGCCaua--UGG-GGUUGCGgAGcu -5'
11084 5' -55.3 NC_002794.1 + 98096 0.68 0.904124
Target:  5'- uUGGCgGGUAU-CCCCggUGCCaaCGGg -3'
miRNA:   3'- cAUCGgCCAUAuGGGGuuGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 98973 0.67 0.927009
Target:  5'- --cGUCGGcg-GCgCCGugGCCUCGGu -3'
miRNA:   3'- cauCGGCCauaUGgGGUugCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 102299 0.73 0.662227
Target:  5'- -cGGCCGGgucuucgGCUCCGACGCgCUCGu -3'
miRNA:   3'- caUCGGCCaua----UGGGGUUGCG-GAGCu -5'
11084 5' -55.3 NC_002794.1 + 104427 0.66 0.941725
Target:  5'- -cGGCCGccg-GCCCgGACGCCgccgCGGg -3'
miRNA:   3'- caUCGGCcauaUGGGgUUGCGGa---GCU- -5'
11084 5' -55.3 NC_002794.1 + 107515 0.66 0.946167
Target:  5'- --uGCCGGUcgACgCCGACgGCCggcgCGGc -3'
miRNA:   3'- cauCGGCCAuaUGgGGUUG-CGGa---GCU- -5'
11084 5' -55.3 NC_002794.1 + 108291 0.66 0.946167
Target:  5'- -aGGcCCGGUAUcugAUCCCGuuGCGCCggCGGu -3'
miRNA:   3'- caUC-GGCCAUA---UGGGGU--UGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 114845 0.7 0.824001
Target:  5'- -cGGCuCGGaggaccucccgccGCUCCAGCGCCUCGAg -3'
miRNA:   3'- caUCG-GCCaua----------UGGGGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 116911 0.68 0.884556
Target:  5'- -cGGCCGGUccggcgucgGCUCCGGCGUCgUCGGc -3'
miRNA:   3'- caUCGGCCAua-------UGGGGUUGCGG-AGCU- -5'
11084 5' -55.3 NC_002794.1 + 119555 0.67 0.910193
Target:  5'- --cGCCGGccacGUGUCCCGgaGCGCCUUGAc -3'
miRNA:   3'- cauCGGCCa---UAUGGGGU--UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 119598 0.69 0.831501
Target:  5'- --cGUCGcaGUcGCUCCAGCGCCUCGAg -3'
miRNA:   3'- cauCGGCcaUA-UGGGGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 120146 0.66 0.954367
Target:  5'- -gGGCCGGU--GCCggaCGACGaggaCCUCGAg -3'
miRNA:   3'- caUCGGCCAuaUGGg--GUUGC----GGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 122685 0.69 0.847645
Target:  5'- --uGCCGGUc-GCgCCAGCGCCgggCGAc -3'
miRNA:   3'- cauCGGCCAuaUGgGGUUGCGGa--GCU- -5'
11084 5' -55.3 NC_002794.1 + 135377 0.66 0.946167
Target:  5'- -gGGUCGGUuuAUACUCagagAGCGUCUCGGa -3'
miRNA:   3'- caUCGGCCA--UAUGGGg---UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 137499 0.67 0.921637
Target:  5'- -cGGUCGGUuccuCCgCCGGCGUUUCGAc -3'
miRNA:   3'- caUCGGCCAuau-GG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 143836 0.66 0.958131
Target:  5'- -cGGCCGGU-----CCGACGCCUCc- -3'
miRNA:   3'- caUCGGCCAuauggGGUUGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 144947 0.67 0.921637
Target:  5'- --uGCUGGaccaccUGUGucuCCUCGGCGCCUCGAc -3'
miRNA:   3'- cauCGGCC------AUAU---GGGGUUGCGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.