miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 194019 0.69 0.855434
Target:  5'- -cGGCCGcc--GCCgCCGGCGCCUCGc -3'
miRNA:   3'- caUCGGCcauaUGG-GGUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 193726 0.67 0.932148
Target:  5'- --cGCCGGUGU-CCUCGcCGCCcgCGGc -3'
miRNA:   3'- cauCGGCCAUAuGGGGUuGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 193651 0.66 0.961678
Target:  5'- ---cCCGGUcgGCUCCGgcGCGCCcCGAc -3'
miRNA:   3'- caucGGCCAuaUGGGGU--UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 190938 0.85 0.161924
Target:  5'- -cAGCCGGUAgcacgGCCCCAgcagcaccaGCGCCUCGGg -3'
miRNA:   3'- caUCGGCCAUa----UGGGGU---------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 186304 0.69 0.870413
Target:  5'- -cGGCCGGUc-GCCgCGGCGCgCUCGu -3'
miRNA:   3'- caUCGGCCAuaUGGgGUUGCG-GAGCu -5'
11084 5' -55.3 NC_002794.1 + 184482 0.66 0.961678
Target:  5'- cGgcGCgCGGg--GCCCCGgACGCC-CGGg -3'
miRNA:   3'- -CauCG-GCCauaUGGGGU-UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 183666 0.66 0.958131
Target:  5'- --cGCCGG---GCCCgAGCGCCgacgggUCGAg -3'
miRNA:   3'- cauCGGCCauaUGGGgUUGCGG------AGCU- -5'
11084 5' -55.3 NC_002794.1 + 183619 0.7 0.805974
Target:  5'- -cGGCCGGc--GCCCCcGCGCCccCGAc -3'
miRNA:   3'- caUCGGCCauaUGGGGuUGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 182012 0.68 0.884556
Target:  5'- -aAGcCCGGg--ACCCCGGCGUC-CGGg -3'
miRNA:   3'- caUC-GGCCauaUGGGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 181676 0.68 0.904124
Target:  5'- --cGuuGGUGUGCgcggaCCGccGCGCCUCGGc -3'
miRNA:   3'- cauCggCCAUAUGg----GGU--UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 180787 0.69 0.839665
Target:  5'- gGUGGCCGGggauCUCCGuuugagcgACGUCUCGGa -3'
miRNA:   3'- -CAUCGGCCauauGGGGU--------UGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 180682 0.67 0.937053
Target:  5'- --cGCCGGcc-GCuCCCGGCGCC-CGGc -3'
miRNA:   3'- cauCGGCCauaUG-GGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 178197 0.67 0.921637
Target:  5'- -cGGCCGGcUGacUGCCCUcgguaGCCUCGGc -3'
miRNA:   3'- caUCGGCC-AU--AUGGGGuug--CGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 176012 0.71 0.779063
Target:  5'- gGUGGCCGGUGUAUCUCGuAUGUUUCu- -3'
miRNA:   3'- -CAUCGGCCAUAUGGGGU-UGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 152142 0.76 0.483934
Target:  5'- -gAGCCGGUucaacccGCUCCAGCGCCUgCGGg -3'
miRNA:   3'- caUCGGCCAua-----UGGGGUUGCGGA-GCU- -5'
11084 5' -55.3 NC_002794.1 + 150534 0.73 0.672298
Target:  5'- cGUAGCCGGgccgGCgCCAugGCCgucUCGGc -3'
miRNA:   3'- -CAUCGGCCaua-UGgGGUugCGG---AGCU- -5'
11084 5' -55.3 NC_002794.1 + 145525 0.73 0.621784
Target:  5'- -aGGCCGG----CCCgAGCGCCUCGGg -3'
miRNA:   3'- caUCGGCCauauGGGgUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 144947 0.67 0.921637
Target:  5'- --uGCUGGaccaccUGUGucuCCUCGGCGCCUCGAc -3'
miRNA:   3'- cauCGGCC------AUAU---GGGGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 143836 0.66 0.958131
Target:  5'- -cGGCCGGU-----CCGACGCCUCc- -3'
miRNA:   3'- caUCGGCCAuauggGGUUGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 137499 0.67 0.921637
Target:  5'- -cGGUCGGUuccuCCgCCGGCGUUUCGAc -3'
miRNA:   3'- caUCGGCCAuau-GG-GGUUGCGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.