Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11084 | 5' | -55.3 | NC_002794.1 | + | 135377 | 0.66 | 0.946167 |
Target: 5'- -gGGUCGGUuuAUACUCagagAGCGUCUCGGa -3' miRNA: 3'- caUCGGCCA--UAUGGGg---UUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 122685 | 0.69 | 0.847645 |
Target: 5'- --uGCCGGUc-GCgCCAGCGCCgggCGAc -3' miRNA: 3'- cauCGGCCAuaUGgGGUUGCGGa--GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 120146 | 0.66 | 0.954367 |
Target: 5'- -gGGCCGGU--GCCggaCGACGaggaCCUCGAg -3' miRNA: 3'- caUCGGCCAuaUGGg--GUUGC----GGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 119598 | 0.69 | 0.831501 |
Target: 5'- --cGUCGcaGUcGCUCCAGCGCCUCGAg -3' miRNA: 3'- cauCGGCcaUA-UGGGGUUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 119555 | 0.67 | 0.910193 |
Target: 5'- --cGCCGGccacGUGUCCCGgaGCGCCUUGAc -3' miRNA: 3'- cauCGGCCa---UAUGGGGU--UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 116911 | 0.68 | 0.884556 |
Target: 5'- -cGGCCGGUccggcgucgGCUCCGGCGUCgUCGGc -3' miRNA: 3'- caUCGGCCAua-------UGGGGUUGCGG-AGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 114845 | 0.7 | 0.824001 |
Target: 5'- -cGGCuCGGaggaccucccgccGCUCCAGCGCCUCGAg -3' miRNA: 3'- caUCG-GCCaua----------UGGGGUUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 108291 | 0.66 | 0.946167 |
Target: 5'- -aGGcCCGGUAUcugAUCCCGuuGCGCCggCGGu -3' miRNA: 3'- caUC-GGCCAUA---UGGGGU--UGCGGa-GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 107515 | 0.66 | 0.946167 |
Target: 5'- --uGCCGGUcgACgCCGACgGCCggcgCGGc -3' miRNA: 3'- cauCGGCCAuaUGgGGUUG-CGGa---GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 104427 | 0.66 | 0.941725 |
Target: 5'- -cGGCCGccg-GCCCgGACGCCgccgCGGg -3' miRNA: 3'- caUCGGCcauaUGGGgUUGCGGa---GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 102299 | 0.73 | 0.662227 |
Target: 5'- -cGGCCGGgucuucgGCUCCGACGCgCUCGu -3' miRNA: 3'- caUCGGCCaua----UGGGGUUGCG-GAGCu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 98973 | 0.67 | 0.927009 |
Target: 5'- --cGUCGGcg-GCgCCGugGCCUCGGu -3' miRNA: 3'- cauCGGCCauaUGgGGUugCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 98096 | 0.68 | 0.904124 |
Target: 5'- uUGGCgGGUAU-CCCCggUGCCaaCGGg -3' miRNA: 3'- cAUCGgCCAUAuGGGGuuGCGGa-GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 96729 | 0.66 | 0.961678 |
Target: 5'- -gAGCCGGcgacgACCgCCGGCGCgUCu- -3' miRNA: 3'- caUCGGCCaua--UGG-GGUUGCGgAGcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 94608 | 0.71 | 0.750994 |
Target: 5'- --uGCUGGUGgacucgGCCCCGuucaagaggaACGCCUUGAc -3' miRNA: 3'- cauCGGCCAUa-----UGGGGU----------UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86647 | 0.68 | 0.904124 |
Target: 5'- -gAGCCGGgacggAUGCUCCGGCccgaGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86599 | 0.68 | 0.904124 |
Target: 5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86551 | 0.71 | 0.750994 |
Target: 5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86503 | 0.71 | 0.750994 |
Target: 5'- -gAGCCGGgacggAUGCUCCGggccGCGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGU----UGCGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 86431 | 0.68 | 0.904124 |
Target: 5'- -gAGCCGGgacggAUGCUCCGGCucgaGCC-CGAc -3' miRNA: 3'- caUCGGCCa----UAUGGGGUUG----CGGaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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