Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11084 | 5' | -55.3 | NC_002794.1 | + | 190938 | 0.85 | 0.161924 |
Target: 5'- -cAGCCGGUAgcacgGCCCCAgcagcaccaGCGCCUCGGg -3' miRNA: 3'- caUCGGCCAUa----UGGGGU---------UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 85013 | 0.66 | 0.957765 |
Target: 5'- --cGCuCGG-GUGCCCCGGgcccacgcucgggUGCCUCGGg -3' miRNA: 3'- cauCG-GCCaUAUGGGGUU-------------GCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 70512 | 0.66 | 0.952001 |
Target: 5'- -gAGCCGGUccaGCCCgugcucguaaugaaaCAgcagccgaucguGCGCCUCGAg -3' miRNA: 3'- caUCGGCCAua-UGGG---------------GU------------UGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 63633 | 0.66 | 0.953194 |
Target: 5'- -cGGCCGagcaccucgucugcGUG-ACCgCCAACGUCUCGGa -3' miRNA: 3'- caUCGGC--------------CAUaUGG-GGUUGCGGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 72565 | 0.66 | 0.952001 |
Target: 5'- -cGGCCGGgaagaGCCCgcccaacagcgcguuCAGCGCgUCGAa -3' miRNA: 3'- caUCGGCCaua--UGGG---------------GUUGCGgAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 82187 | 0.66 | 0.95038 |
Target: 5'- -aAGcCCGGgc-GCCCCgAGCGCC-CGGc -3' miRNA: 3'- caUC-GGCCauaUGGGG-UUGCGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 68945 | 0.66 | 0.95038 |
Target: 5'- -gGGCCGcg--GCgCCGGCGCCUCu- -3' miRNA: 3'- caUCGGCcauaUGgGGUUGCGGAGcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 108291 | 0.66 | 0.946167 |
Target: 5'- -aGGcCCGGUAUcugAUCCCGuuGCGCCggCGGu -3' miRNA: 3'- caUC-GGCCAUA---UGGGGU--UGCGGa-GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 107515 | 0.66 | 0.946167 |
Target: 5'- --uGCCGGUcgACgCCGACgGCCggcgCGGc -3' miRNA: 3'- cauCGGCCAuaUGgGGUUG-CGGa---GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 120146 | 0.66 | 0.954367 |
Target: 5'- -gGGCCGGU--GCCggaCGACGaggaCCUCGAg -3' miRNA: 3'- caUCGGCCAuaUGGg--GUUGC----GGAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 77010 | 0.66 | 0.954367 |
Target: 5'- ---aCCGGgAUGCCgCCGGCGCacCUCGAc -3' miRNA: 3'- caucGGCCaUAUGG-GGUUGCG--GAGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 65361 | 0.66 | 0.958131 |
Target: 5'- gGgcGCCGGc--GCCCUGACGCCacaCGGc -3' miRNA: 3'- -CauCGGCCauaUGGGGUUGCGGa--GCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 96729 | 0.66 | 0.961678 |
Target: 5'- -gAGCCGGcgacgACCgCCGGCGCgUCu- -3' miRNA: 3'- caUCGGCCaua--UGG-GGUUGCGgAGcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 184482 | 0.66 | 0.961678 |
Target: 5'- cGgcGCgCGGg--GCCCCGgACGCC-CGGg -3' miRNA: 3'- -CauCG-GCCauaUGGGGU-UGCGGaGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 8076 | 0.66 | 0.961678 |
Target: 5'- -aAGaCGGUGUuCCCCAugGCCa--- -3' miRNA: 3'- caUCgGCCAUAuGGGGUugCGGagcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 183666 | 0.66 | 0.958131 |
Target: 5'- --cGCCGG---GCCCgAGCGCCgacgggUCGAg -3' miRNA: 3'- cauCGGCCauaUGGGgUUGCGG------AGCU- -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 72174 | 0.66 | 0.961678 |
Target: 5'- --uGCCGGUAgGCCgCgAACGCUUUGc -3' miRNA: 3'- cauCGGCCAUaUGG-GgUUGCGGAGCu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 55414 | 0.66 | 0.958131 |
Target: 5'- -cGGCCGaGgcgACCCCGGCGUCcgCGu -3' miRNA: 3'- caUCGGC-CauaUGGGGUUGCGGa-GCu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 143836 | 0.66 | 0.958131 |
Target: 5'- -cGGCCGGU-----CCGACGCCUCc- -3' miRNA: 3'- caUCGGCCAuauggGGUUGCGGAGcu -5' |
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11084 | 5' | -55.3 | NC_002794.1 | + | 307 | 0.66 | 0.958131 |
Target: 5'- --cGCCGGgcccGCCCCAcccccacgcgcGCGCCgcCGAc -3' miRNA: 3'- cauCGGCCaua-UGGGGU-----------UGCGGa-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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