miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11084 5' -55.3 NC_002794.1 + 72174 0.66 0.961678
Target:  5'- --uGCCGGUAgGCCgCgAACGCUUUGc -3'
miRNA:   3'- cauCGGCCAUaUGG-GgUUGCGGAGCu -5'
11084 5' -55.3 NC_002794.1 + 183666 0.66 0.958131
Target:  5'- --cGCCGG---GCCCgAGCGCCgacgggUCGAg -3'
miRNA:   3'- cauCGGCCauaUGGGgUUGCGG------AGCU- -5'
11084 5' -55.3 NC_002794.1 + 8076 0.66 0.961678
Target:  5'- -aAGaCGGUGUuCCCCAugGCCa--- -3'
miRNA:   3'- caUCgGCCAUAuGGGGUugCGGagcu -5'
11084 5' -55.3 NC_002794.1 + 184482 0.66 0.961678
Target:  5'- cGgcGCgCGGg--GCCCCGgACGCC-CGGg -3'
miRNA:   3'- -CauCG-GCCauaUGGGGU-UGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 96729 0.66 0.961678
Target:  5'- -gAGCCGGcgacgACCgCCGGCGCgUCu- -3'
miRNA:   3'- caUCGGCCaua--UGG-GGUUGCGgAGcu -5'
11084 5' -55.3 NC_002794.1 + 63633 0.66 0.953194
Target:  5'- -cGGCCGagcaccucgucugcGUG-ACCgCCAACGUCUCGGa -3'
miRNA:   3'- caUCGGC--------------CAUaUGG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 72565 0.66 0.952001
Target:  5'- -cGGCCGGgaagaGCCCgcccaacagcgcguuCAGCGCgUCGAa -3'
miRNA:   3'- caUCGGCCaua--UGGG---------------GUUGCGgAGCU- -5'
11084 5' -55.3 NC_002794.1 + 193726 0.67 0.932148
Target:  5'- --cGCCGGUGU-CCUCGcCGCCcgCGGc -3'
miRNA:   3'- cauCGGCCAUAuGGGGUuGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 178197 0.67 0.921637
Target:  5'- -cGGCCGGcUGacUGCCCUcgguaGCCUCGGc -3'
miRNA:   3'- caUCGGCC-AU--AUGGGGuug--CGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 98973 0.67 0.927009
Target:  5'- --cGUCGGcg-GCgCCGugGCCUCGGu -3'
miRNA:   3'- cauCGGCCauaUGgGGUugCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 17583 0.67 0.937053
Target:  5'- ---aCCGGacccgacGCCaCCGACGCCUCGGu -3'
miRNA:   3'- caucGGCCaua----UGG-GGUUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 31533 0.67 0.937053
Target:  5'- --uGCgCGGcgaGCCCCGACGUCUcCGAg -3'
miRNA:   3'- cauCG-GCCauaUGGGGUUGCGGA-GCU- -5'
11084 5' -55.3 NC_002794.1 + 180682 0.67 0.937053
Target:  5'- --cGCCGGcc-GCuCCCGGCGCC-CGGc -3'
miRNA:   3'- cauCGGCCauaUG-GGGUUGCGGaGCU- -5'
11084 5' -55.3 NC_002794.1 + 104427 0.66 0.941725
Target:  5'- -cGGCCGccg-GCCCgGACGCCgccgCGGg -3'
miRNA:   3'- caUCGGCcauaUGGGgUUGCGGa---GCU- -5'
11084 5' -55.3 NC_002794.1 + 135377 0.66 0.946167
Target:  5'- -gGGUCGGUuuAUACUCagagAGCGUCUCGGa -3'
miRNA:   3'- caUCGGCCA--UAUGGGg---UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 36442 0.66 0.941725
Target:  5'- aGgcGCCGGagcUGCUCUuugAACGUCUCGAa -3'
miRNA:   3'- -CauCGGCCau-AUGGGG---UUGCGGAGCU- -5'
11084 5' -55.3 NC_002794.1 + 107515 0.66 0.946167
Target:  5'- --uGCCGGUcgACgCCGACgGCCggcgCGGc -3'
miRNA:   3'- cauCGGCCAuaUGgGGUUG-CGGa---GCU- -5'
11084 5' -55.3 NC_002794.1 + 108291 0.66 0.946167
Target:  5'- -aGGcCCGGUAUcugAUCCCGuuGCGCCggCGGu -3'
miRNA:   3'- caUC-GGCCAUA---UGGGGU--UGCGGa-GCU- -5'
11084 5' -55.3 NC_002794.1 + 68945 0.66 0.95038
Target:  5'- -gGGCCGcg--GCgCCGGCGCCUCu- -3'
miRNA:   3'- caUCGGCcauaUGgGGUUGCGGAGcu -5'
11084 5' -55.3 NC_002794.1 + 82187 0.66 0.95038
Target:  5'- -aAGcCCGGgc-GCCCCgAGCGCC-CGGc -3'
miRNA:   3'- caUC-GGCCauaUGGGG-UUGCGGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.