miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11085 3' -56.4 NC_002794.1 + 187319 0.66 0.942241
Target:  5'- cGUCGCgGG-GUUCCGCagcCGgaGCAGc -3'
miRNA:   3'- aCAGCGgCCaCAAGGCGguaGC--UGUC- -5'
11085 3' -56.4 NC_002794.1 + 139139 0.66 0.942241
Target:  5'- cGUCGCgguaguUGGUGUUCuCGCauUCGACGu -3'
miRNA:   3'- aCAGCG------GCCACAAG-GCGguAGCUGUc -5'
11085 3' -56.4 NC_002794.1 + 138508 0.66 0.937658
Target:  5'- aUGUCGCCGGUcccgGUcgcuucgcucgUUCGCuCGcUCGGCGGc -3'
miRNA:   3'- -ACAGCGGCCA----CA-----------AGGCG-GU-AGCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 28676 0.66 0.937658
Target:  5'- cGcCGCCGGUGgccgucgccgCCGCCGUUGcuGCu- -3'
miRNA:   3'- aCaGCGGCCACaa--------GGCGGUAGC--UGuc -5'
11085 3' -56.4 NC_002794.1 + 10894 0.66 0.937658
Target:  5'- cGggCGgaGGUGUUUCGCCA-CGGCAa -3'
miRNA:   3'- aCa-GCggCCACAAGGCGGUaGCUGUc -5'
11085 3' -56.4 NC_002794.1 + 123261 0.66 0.93285
Target:  5'- -uUCGCCGGcUGguccgggCCGCgGUCGucGCGGg -3'
miRNA:   3'- acAGCGGCC-ACaa-----GGCGgUAGC--UGUC- -5'
11085 3' -56.4 NC_002794.1 + 146298 0.66 0.932356
Target:  5'- cGUCGCgcaGGUGUUgacgggcUCGCCGacgcgCGGCGGa -3'
miRNA:   3'- aCAGCGg--CCACAA-------GGCGGUa----GCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 118200 0.66 0.927814
Target:  5'- cGUCGCCG-----CCGCCGUCGccucGCGGa -3'
miRNA:   3'- aCAGCGGCcacaaGGCGGUAGC----UGUC- -5'
11085 3' -56.4 NC_002794.1 + 146977 0.66 0.927298
Target:  5'- cUGUCGCgaGGUcGgcgCCGCCggccgacGUCGGCGGc -3'
miRNA:   3'- -ACAGCGg-CCA-Caa-GGCGG-------UAGCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 142018 0.66 0.92255
Target:  5'- aGUUGCCGGagGUgcUUCGCCuGUCG-CGGg -3'
miRNA:   3'- aCAGCGGCCa-CA--AGGCGG-UAGCuGUC- -5'
11085 3' -56.4 NC_002794.1 + 129792 0.66 0.92255
Target:  5'- cGUCGCCGGaa-UUCGCUGUCGGa-- -3'
miRNA:   3'- aCAGCGGCCacaAGGCGGUAGCUguc -5'
11085 3' -56.4 NC_002794.1 + 137574 0.67 0.917059
Target:  5'- cGUCGCCGccggggccggaGUGcggggagCCGCCGcCGGCGGu -3'
miRNA:   3'- aCAGCGGC-----------CACaa-----GGCGGUaGCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 49454 0.67 0.911342
Target:  5'- cGUCGCC-GUGgcgCCGCCGUgacCGGCc- -3'
miRNA:   3'- aCAGCGGcCACaa-GGCGGUA---GCUGuc -5'
11085 3' -56.4 NC_002794.1 + 185270 0.67 0.905399
Target:  5'- cGcCGCCGGccgagUGggCCGCCG--GACAGg -3'
miRNA:   3'- aCaGCGGCC-----ACaaGGCGGUagCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 94019 0.67 0.896706
Target:  5'- ---gGCCGGcggGUUCCGCCGgcgggcccgagagCGGCGGc -3'
miRNA:   3'- acagCGGCCa--CAAGGCGGUa------------GCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 187562 0.67 0.892848
Target:  5'- cGcCGUCGGgcccGUacCCGCCGUCGGCGc -3'
miRNA:   3'- aCaGCGGCCa---CAa-GGCGGUAGCUGUc -5'
11085 3' -56.4 NC_002794.1 + 121239 0.67 0.886244
Target:  5'- aGUCGCCGcUGccgCCGCCGccgccgcggccUCGGCAc -3'
miRNA:   3'- aCAGCGGCcACaa-GGCGGU-----------AGCUGUc -5'
11085 3' -56.4 NC_002794.1 + 41347 0.68 0.8724
Target:  5'- gGUCuCCGGgGUcaCCGCCGUCGGCc- -3'
miRNA:   3'- aCAGcGGCCaCAa-GGCGGUAGCUGuc -5'
11085 3' -56.4 NC_002794.1 + 65923 0.68 0.865168
Target:  5'- cGUCGCCGGcggcgGUggCGUCggCGGCGGu -3'
miRNA:   3'- aCAGCGGCCa----CAagGCGGuaGCUGUC- -5'
11085 3' -56.4 NC_002794.1 + 124401 0.68 0.850111
Target:  5'- cGUCGCCGGUcGUcggggcgccgUCCGCCG-CGGu-- -3'
miRNA:   3'- aCAGCGGCCA-CA----------AGGCGGUaGCUguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.