miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11087 3' -55.1 NC_002794.1 + 162497 0.69 0.880611
Target:  5'- gCCgauucgCGUACGuggcaGCuGGGUAUCUGGGCu -3'
miRNA:   3'- -GGa-----GCAUGUggg--UG-CCCAUAGACCCG- -5'
11087 3' -55.1 NC_002794.1 + 116616 0.69 0.880611
Target:  5'- aUCUCGU-CGCCCAgGcGGUAgagCggcagGGGCc -3'
miRNA:   3'- -GGAGCAuGUGGGUgC-CCAUa--Ga----CCCG- -5'
11087 3' -55.1 NC_002794.1 + 149894 0.69 0.873625
Target:  5'- -aUCGUG-ACCCGggauCGGcuGUGUCUGGGCu -3'
miRNA:   3'- ggAGCAUgUGGGU----GCC--CAUAGACCCG- -5'
11087 3' -55.1 NC_002794.1 + 149866 0.69 0.873625
Target:  5'- --gCGgcCGCCCGCucGGGggGUCUGGGUc -3'
miRNA:   3'- ggaGCauGUGGGUG--CCCa-UAGACCCG- -5'
11087 3' -55.1 NC_002794.1 + 1054 0.7 0.859041
Target:  5'- aCUUCGaGCGCCCGCccccccccggGGGUucguuUCgGGGCg -3'
miRNA:   3'- -GGAGCaUGUGGGUG----------CCCAu----AGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 139465 0.7 0.843678
Target:  5'- uCgUCGUGCGCCaggACGguGGUGUagaUGGGCg -3'
miRNA:   3'- -GgAGCAUGUGGg--UGC--CCAUAg--ACCCG- -5'
11087 3' -55.1 NC_002794.1 + 127967 0.7 0.843678
Target:  5'- gCUaCGaGCgACCCugGuggugugguGGUGUCUGGGCg -3'
miRNA:   3'- gGA-GCaUG-UGGGugC---------CCAUAGACCCG- -5'
11087 3' -55.1 NC_002794.1 + 77656 0.71 0.810818
Target:  5'- aCCU-GUGCgGCCCGCGGGUcugCgGGGUc -3'
miRNA:   3'- -GGAgCAUG-UGGGUGCCCAua-GaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 68931 0.72 0.766341
Target:  5'- uCCUCGU-CGCCCGCGGGccgc--GGCg -3'
miRNA:   3'- -GGAGCAuGUGGGUGCCCauagacCCG- -5'
11087 3' -55.1 NC_002794.1 + 132141 0.72 0.747698
Target:  5'- aCUCGcUGgGCCCGgggauCGGGgacgGUCUGGGUc -3'
miRNA:   3'- gGAGC-AUgUGGGU-----GCCCa---UAGACCCG- -5'
11087 3' -55.1 NC_002794.1 + 34831 0.72 0.72867
Target:  5'- cCCUCGccgGCGCCggaGCGGGcGUCggagcGGGCg -3'
miRNA:   3'- -GGAGCa--UGUGGg--UGCCCaUAGa----CCCG- -5'
11087 3' -55.1 NC_002794.1 + 144105 0.74 0.673921
Target:  5'- gCUUGUGCGCCCugGGGcacuacgccacggcgUAuuaUCUGcGGCa -3'
miRNA:   3'- gGAGCAUGUGGGugCCC---------------AU---AGAC-CCG- -5'
11087 3' -55.1 NC_002794.1 + 195115 0.77 0.475035
Target:  5'- gUCUCGUGCGCCCGCGGcgcgCgcGGGCu -3'
miRNA:   3'- -GGAGCAUGUGGGUGCCcauaGa-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.