miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11087 3' -55.1 NC_002794.1 + 1054 0.7 0.859041
Target:  5'- aCUUCGaGCGCCCGCccccccccggGGGUucguuUCgGGGCg -3'
miRNA:   3'- -GGAGCaUGUGGGUG----------CCCAu----AGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 33452 0.68 0.917994
Target:  5'- aCCUCGggcggccgccggacGCGCCCACGccgcugcagCUGGGCa -3'
miRNA:   3'- -GGAGCa-------------UGUGGGUGCccaua----GACCCG- -5'
11087 3' -55.1 NC_002794.1 + 34831 0.72 0.72867
Target:  5'- cCCUCGccgGCGCCggaGCGGGcGUCggagcGGGCg -3'
miRNA:   3'- -GGAGCa--UGUGGg--UGCCCaUAGa----CCCG- -5'
11087 3' -55.1 NC_002794.1 + 35983 0.66 0.968664
Target:  5'- gCUCGcggacccgguuuUAUugUCGCGGGgcUC-GGGCg -3'
miRNA:   3'- gGAGC------------AUGugGGUGCCCauAGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 49497 0.67 0.938428
Target:  5'- aCCUCGUcgccgucguCGCUCGcCGGGUAcaUGGGUu -3'
miRNA:   3'- -GGAGCAu--------GUGGGU-GCCCAUagACCCG- -5'
11087 3' -55.1 NC_002794.1 + 50755 0.68 0.923975
Target:  5'- gCUCGUcCGCCC-CGGGcggcggcgacggcgcGUCUcGGGCg -3'
miRNA:   3'- gGAGCAuGUGGGuGCCCa--------------UAGA-CCCG- -5'
11087 3' -55.1 NC_002794.1 + 53783 0.67 0.955263
Target:  5'- cCCgCGacGCGCCCgGCGGGUuUCUcGGCg -3'
miRNA:   3'- -GGaGCa-UGUGGG-UGCCCAuAGAcCCG- -5'
11087 3' -55.1 NC_002794.1 + 53828 0.67 0.955263
Target:  5'- gCCUCGgcgggaGCCUcgACGGGcGUCUcGGCg -3'
miRNA:   3'- -GGAGCaug---UGGG--UGCCCaUAGAcCCG- -5'
11087 3' -55.1 NC_002794.1 + 62673 0.68 0.906417
Target:  5'- uCCUCGagaacCGCCUGCGGGUGcagCUGugucGGCg -3'
miRNA:   3'- -GGAGCau---GUGGGUGCCCAUa--GAC----CCG- -5'
11087 3' -55.1 NC_002794.1 + 68931 0.72 0.766341
Target:  5'- uCCUCGU-CGCCCGCGGGccgc--GGCg -3'
miRNA:   3'- -GGAGCAuGUGGGUGCCCauagacCCG- -5'
11087 3' -55.1 NC_002794.1 + 69354 0.67 0.938428
Target:  5'- aUCUCGUuC-CCCGCGGaG-AUC-GGGCg -3'
miRNA:   3'- -GGAGCAuGuGGGUGCC-CaUAGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 72083 0.67 0.951385
Target:  5'- cCUUCGUACACCggCACGcGGUAguaGGuGCu -3'
miRNA:   3'- -GGAGCAUGUGG--GUGC-CCAUagaCC-CG- -5'
11087 3' -55.1 NC_002794.1 + 77656 0.71 0.810818
Target:  5'- aCCU-GUGCgGCCCGCGGGUcugCgGGGUc -3'
miRNA:   3'- -GGAgCAUG-UGGGUGCCCAua-GaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 102142 0.66 0.962377
Target:  5'- uCUUCGUGCGCUUcgGCGGcGUGcgCgccgGGGCc -3'
miRNA:   3'- -GGAGCAUGUGGG--UGCC-CAUa-Ga---CCCG- -5'
11087 3' -55.1 NC_002794.1 + 111744 0.67 0.937961
Target:  5'- gCUCGUcgagcugGCGCCgCGCGGcGccGUCgGGGCg -3'
miRNA:   3'- gGAGCA-------UGUGG-GUGCC-Ca-UAGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 113058 0.66 0.965622
Target:  5'- gCCUCGaGguCCCGCaGGUAcucCUGGaGCg -3'
miRNA:   3'- -GGAGCaUguGGGUGcCCAUa--GACC-CG- -5'
11087 3' -55.1 NC_002794.1 + 116350 0.68 0.922908
Target:  5'- aCUCGUACACggCCGCGcGGUccgaccgGUCgGuGGCg -3'
miRNA:   3'- gGAGCAUGUG--GGUGC-CCA-------UAGaC-CCG- -5'
11087 3' -55.1 NC_002794.1 + 116616 0.69 0.880611
Target:  5'- aUCUCGU-CGCCCAgGcGGUAgagCggcagGGGCc -3'
miRNA:   3'- -GGAGCAuGUGGGUgC-CCAUa--Ga----CCCG- -5'
11087 3' -55.1 NC_002794.1 + 120371 0.66 0.965622
Target:  5'- uUCUCGUugGCCCugaagGCGGcuaacGUGUCgGcGGCc -3'
miRNA:   3'- -GGAGCAugUGGG-----UGCC-----CAUAGaC-CCG- -5'
11087 3' -55.1 NC_002794.1 + 127899 0.67 0.948954
Target:  5'- uUUUGUugACCCugugagaccgaggggGCGGGgauUCgGGGCg -3'
miRNA:   3'- gGAGCAugUGGG---------------UGCCCau-AGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.