miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11087 3' -55.1 NC_002794.1 + 113058 0.66 0.965622
Target:  5'- gCCUCGaGguCCCGCaGGUAcucCUGGaGCg -3'
miRNA:   3'- -GGAGCaUguGGGUGcCCAUa--GACC-CG- -5'
11087 3' -55.1 NC_002794.1 + 181093 0.66 0.965622
Target:  5'- cUCUCGaugACGCUCuCGGGgacgcUCUcGGGCa -3'
miRNA:   3'- -GGAGCa--UGUGGGuGCCCau---AGA-CCCG- -5'
11087 3' -55.1 NC_002794.1 + 120371 0.66 0.965622
Target:  5'- uUCUCGUugGCCCugaagGCGGcuaacGUGUCgGcGGCc -3'
miRNA:   3'- -GGAGCAugUGGG-----UGCC-----CAUAGaC-CCG- -5'
11087 3' -55.1 NC_002794.1 + 53783 0.67 0.955263
Target:  5'- cCCgCGacGCGCCCgGCGGGUuUCUcGGCg -3'
miRNA:   3'- -GGaGCa-UGUGGG-UGCCCAuAGAcCCG- -5'
11087 3' -55.1 NC_002794.1 + 102142 0.66 0.962377
Target:  5'- uCUUCGUGCGCUUcgGCGGcGUGcgCgccgGGGCc -3'
miRNA:   3'- -GGAGCAUGUGGG--UGCC-CAUa-Ga---CCCG- -5'
11087 3' -55.1 NC_002794.1 + 53828 0.67 0.955263
Target:  5'- gCCUCGgcgggaGCCUcgACGGGcGUCUcGGCg -3'
miRNA:   3'- -GGAGCaug---UGGG--UGCCCaUAGAcCCG- -5'
11087 3' -55.1 NC_002794.1 + 151504 0.67 0.951385
Target:  5'- aCgCGUGCGCUCGguuCGGGUGgcCUGGuGCg -3'
miRNA:   3'- gGaGCAUGUGGGU---GCCCAUa-GACC-CG- -5'
11087 3' -55.1 NC_002794.1 + 127899 0.67 0.948954
Target:  5'- uUUUGUugACCCugugagaccgaggggGCGGGgauUCgGGGCg -3'
miRNA:   3'- gGAGCAugUGGG---------------UGCCCau-AGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 72083 0.67 0.951385
Target:  5'- cCUUCGUACACCggCACGcGGUAguaGGuGCu -3'
miRNA:   3'- -GGAGCAUGUGG--GUGC-CCAUagaCC-CG- -5'
11087 3' -55.1 NC_002794.1 + 111744 0.67 0.937961
Target:  5'- gCUCGUcgagcugGCGCCgCGCGGcGccGUCgGGGCg -3'
miRNA:   3'- gGAGCA-------UGUGG-GUGCC-Ca-UAGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 49497 0.67 0.938428
Target:  5'- aCCUCGUcgccgucguCGCUCGcCGGGUAcaUGGGUu -3'
miRNA:   3'- -GGAGCAu--------GUGGGU-GCCCAUagACCCG- -5'
11087 3' -55.1 NC_002794.1 + 69354 0.67 0.938428
Target:  5'- aUCUCGUuC-CCCGCGGaG-AUC-GGGCg -3'
miRNA:   3'- -GGAGCAuGuGGGUGCC-CaUAGaCCCG- -5'
11087 3' -55.1 NC_002794.1 + 195115 0.77 0.475035
Target:  5'- gUCUCGUGCGCCCGCGGcgcgCgcGGGCu -3'
miRNA:   3'- -GGAGCAUGUGGGUGCCcauaGa-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.