miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 44519 0.66 0.573682
Target:  5'- aCCGG-GCCcguguccgcGAGCGCGCCGUcgucgucgCCGGcgGCg -3'
miRNA:   3'- gGGCCgCGG---------CUCGCGUGGCG--------GGCC--UG- -5'
11088 3' -66.2 NC_002794.1 + 252 0.66 0.573682
Target:  5'- cCCCGGacuGCCGc-CGCG-CGCgCGGACg -3'
miRNA:   3'- -GGGCCg--CGGCucGCGUgGCGgGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 19959 0.66 0.573682
Target:  5'- gCgGGCuUCGAGCuGCgGCCGCCCuucGGGCu -3'
miRNA:   3'- gGgCCGcGGCUCG-CG-UGGCGGG---CCUG- -5'
11088 3' -66.2 NC_002794.1 + 87359 0.66 0.573682
Target:  5'- gUCCGGCGgCGAGCGg--CGuUCUGGGCg -3'
miRNA:   3'- -GGGCCGCgGCUCGCgugGC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 37140 0.66 0.573682
Target:  5'- gCCGG-GUCGAGgGCGCagcuccaguCGCuCCGGAUc -3'
miRNA:   3'- gGGCCgCGGCUCgCGUG---------GCG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 107885 0.66 0.573682
Target:  5'- -gCGGCGCggCGGGUGCgGCUGCCgGGuCu -3'
miRNA:   3'- ggGCCGCG--GCUCGCG-UGGCGGgCCuG- -5'
11088 3' -66.2 NC_002794.1 + 118684 0.66 0.573682
Target:  5'- nCCGcCGCCG-GCgGCAgCGCCCaGGAg -3'
miRNA:   3'- gGGCcGCGGCuCG-CGUgGCGGG-CCUg -5'
11088 3' -66.2 NC_002794.1 + 108156 0.66 0.573682
Target:  5'- gCCGggaGCGCCG-GCGCGaagaCGCCgcgacgcgCGGACu -3'
miRNA:   3'- gGGC---CGCGGCuCGCGUg---GCGG--------GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 150531 0.66 0.573682
Target:  5'- cCCCGuaGCCGGGC-CGgCGCCauGGCc -3'
miRNA:   3'- -GGGCcgCGGCUCGcGUgGCGGgcCUG- -5'
11088 3' -66.2 NC_002794.1 + 121255 0.66 0.573682
Target:  5'- gCCGcCGCCGcGGCcucgGCACCGUCCuGGCu -3'
miRNA:   3'- gGGCcGCGGC-UCG----CGUGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 194030 0.66 0.573682
Target:  5'- gCCGGCGCCucGCcCGCCGCCg---- -3'
miRNA:   3'- gGGCCGCGGcuCGcGUGGCGGgccug -5'
11088 3' -66.2 NC_002794.1 + 182778 0.66 0.573682
Target:  5'- gCCCGGUccaccaccuGCC-AGCGCACgGUCgCGGuCg -3'
miRNA:   3'- -GGGCCG---------CGGcUCGCGUGgCGG-GCCuG- -5'
11088 3' -66.2 NC_002794.1 + 65740 0.66 0.572761
Target:  5'- gUCCGGCcuCCGAcggccccGCGCcgccGCCGCCCGuGGu -3'
miRNA:   3'- -GGGCCGc-GGCU-------CGCG----UGGCGGGC-CUg -5'
11088 3' -66.2 NC_002794.1 + 1 0.66 0.567239
Target:  5'- --CGaGCGCCGAGacgcggcCGCgaacacgaaaacgagGCCGCCgCGGGCu -3'
miRNA:   3'- ggGC-CGCGGCUC-------GCG---------------UGGCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 82740 0.66 0.564484
Target:  5'- gCCGcGaGCCGccGC-CACCGCCgCGGACu -3'
miRNA:   3'- gGGC-CgCGGCu-CGcGUGGCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 61531 0.66 0.564484
Target:  5'- gCCGGCgGCCGccgcgaAGaCGaCGCCGCCgCGGcgGCg -3'
miRNA:   3'- gGGCCG-CGGC------UC-GC-GUGGCGG-GCC--UG- -5'
11088 3' -66.2 NC_002794.1 + 32273 0.66 0.564484
Target:  5'- gCCGGCcgaucGgCGAGCGaCGCCGCCgccgcCGcGGCg -3'
miRNA:   3'- gGGCCG-----CgGCUCGC-GUGGCGG-----GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 23983 0.66 0.564484
Target:  5'- gCCGGCGCCaccGuCGCuCCGUCC-GACg -3'
miRNA:   3'- gGGCCGCGGcu-C-GCGuGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 22425 0.66 0.564484
Target:  5'- aCCCaGUGUCGGG-GaCACCGgUCUGGACa -3'
miRNA:   3'- -GGGcCGCGGCUCgC-GUGGC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 21704 0.66 0.564484
Target:  5'- cCUCGGCGUccaCGGGCGCugCGUCgCGa-- -3'
miRNA:   3'- -GGGCCGCG---GCUCGCGugGCGG-GCcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.