miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 60006 0.88 0.017902
Target:  5'- aCCGGCGCCGAGCGCACCGaCCUGcucGACg -3'
miRNA:   3'- gGGCCGCGGCUCGCGUGGC-GGGC---CUG- -5'
11088 3' -66.2 NC_002794.1 + 44420 0.86 0.027009
Target:  5'- gCCGGCGCCGAGCggcucgacgacaccgGCGcgcCCGCCCGGACg -3'
miRNA:   3'- gGGCCGCGGCUCG---------------CGU---GGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 144990 0.85 0.033479
Target:  5'- aCCGGCGCCGGGCGU-CCGCCUGGcGCa -3'
miRNA:   3'- gGGCCGCGGCUCGCGuGGCGGGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 18886 0.83 0.045002
Target:  5'- gCCGGCGCgGAGCGuCACCccuccccgacggcGCCCGGACu -3'
miRNA:   3'- gGGCCGCGgCUCGC-GUGG-------------CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 50806 0.82 0.049807
Target:  5'- gCCCGGCGUCGGGCGCuccggcgcccCCGCCCucGGGCg -3'
miRNA:   3'- -GGGCCGCGGCUCGCGu---------GGCGGG--CCUG- -5'
11088 3' -66.2 NC_002794.1 + 126611 0.82 0.056208
Target:  5'- gCCGGCGCCGAcgucgcggcgugaGCGCGaccgggCGCCCGGACg -3'
miRNA:   3'- gGGCCGCGGCU-------------CGCGUg-----GCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 151581 0.81 0.063716
Target:  5'- cCCCGGCGgCGcGCGcCGCCGCCgCGGGCc -3'
miRNA:   3'- -GGGCCGCgGCuCGC-GUGGCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 148124 0.81 0.065298
Target:  5'- gUCGGUGUCGGGCGCgggGCCGCCgGGGCg -3'
miRNA:   3'- gGGCCGCGGCUCGCG---UGGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 82168 0.8 0.073791
Target:  5'- cUCCGGCGcCCGAGC-CAUaaaGCCCGGGCg -3'
miRNA:   3'- -GGGCCGC-GGCUCGcGUGg--CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 120098 0.8 0.077477
Target:  5'- aCC-GUGCCGAGCGCGCCGCgCGuGACg -3'
miRNA:   3'- gGGcCGCGGCUCGCGUGGCGgGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 60638 0.8 0.077477
Target:  5'- aCCCGGCGCCGgcGGCGCcgGCCaCCCGGcGCg -3'
miRNA:   3'- -GGGCCGCGGC--UCGCG--UGGcGGGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 135977 0.8 0.077477
Target:  5'- gCCCGGCGCCGGGCuccucuuCGCUGUCCGGGu -3'
miRNA:   3'- -GGGCCGCGGCUCGc------GUGGCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 111753 0.79 0.087479
Target:  5'- gCUGGCGCCGcGCgGCGCCGUCgGGGCg -3'
miRNA:   3'- gGGCCGCGGCuCG-CGUGGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 83029 0.79 0.091814
Target:  5'- uCCCGGCGCCGGGCgGCACCcacgGCggaGGACg -3'
miRNA:   3'- -GGGCCGCGGCUCG-CGUGG----CGgg-CCUG- -5'
11088 3' -66.2 NC_002794.1 + 112317 0.77 0.108644
Target:  5'- uUCGGCGCCGAcggcggggaGCGCGCCGgCCGGcgGCg -3'
miRNA:   3'- gGGCCGCGGCU---------CGCGUGGCgGGCC--UG- -5'
11088 3' -66.2 NC_002794.1 + 182994 0.77 0.110743
Target:  5'- gCCGGCGCuucgccgCGGGCGCcccgcgcgcgcccGCCGCCCcGGACg -3'
miRNA:   3'- gGGCCGCG-------GCUCGCG-------------UGGCGGG-CCUG- -5'
11088 3' -66.2 NC_002794.1 + 34082 0.77 0.111273
Target:  5'- gCCGGCgGCCGGGCaGCcgucggGCgGCCCGGACc -3'
miRNA:   3'- gGGCCG-CGGCUCG-CG------UGgCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 12230 0.77 0.111273
Target:  5'- -gCGGCGCCG-GCgGCGCCGUCCGcGGCg -3'
miRNA:   3'- ggGCCGCGGCuCG-CGUGGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 118276 0.77 0.113961
Target:  5'- -gCGGCGCCG-GCGUcggggACCGCgCCGGGCg -3'
miRNA:   3'- ggGCCGCGGCuCGCG-----UGGCG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 122676 0.77 0.113961
Target:  5'- gCCCGGCuguGCCGGuCGCGCCaGCgCCGGGCg -3'
miRNA:   3'- -GGGCCG---CGGCUcGCGUGG-CG-GGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.