miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 137647 0.77 0.11671
Target:  5'- gCgGGCGCCGGGCcuccgGCGCCGCUggugCGGACg -3'
miRNA:   3'- gGgCCGCGGCUCG-----CGUGGCGG----GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 116725 0.77 0.119521
Target:  5'- uCUCGGUGCCGAGCGUguuggcgacGCCGCCgaGGAa -3'
miRNA:   3'- -GGGCCGCGGCUCGCG---------UGGCGGg-CCUg -5'
11088 3' -66.2 NC_002794.1 + 82697 0.77 0.119521
Target:  5'- gCCCGGCgcGCCGAGaCGCGCCGa--GGACg -3'
miRNA:   3'- -GGGCCG--CGGCUC-GCGUGGCgggCCUG- -5'
11088 3' -66.2 NC_002794.1 + 105651 0.76 0.128335
Target:  5'- cUCCGucuCGCCGcGGCGCGcuCCGCCCGGACc -3'
miRNA:   3'- -GGGCc--GCGGC-UCGCGU--GGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 106261 0.76 0.131404
Target:  5'- aCCGGCgagcGCCGcGCGUcgcGCCGCCuCGGACg -3'
miRNA:   3'- gGGCCG----CGGCuCGCG---UGGCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 117633 0.76 0.131404
Target:  5'- --gGGCGCCGAcCGCGCgGCCCcGGACg -3'
miRNA:   3'- gggCCGCGGCUcGCGUGgCGGG-CCUG- -5'
11088 3' -66.2 NC_002794.1 + 121402 0.76 0.131404
Target:  5'- gCCGGCGCCGGGacCGCGaccgUCGCCgGGACc -3'
miRNA:   3'- gGGCCGCGGCUC--GCGU----GGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 141447 0.76 0.131404
Target:  5'- --gGGCGCCGggagcGGCGCGgCGUCCGGACu -3'
miRNA:   3'- gggCCGCGGC-----UCGCGUgGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 44250 0.76 0.134541
Target:  5'- gCUCGGUGCCGGGCgGCucgGCCGCCgGgGACg -3'
miRNA:   3'- -GGGCCGCGGCUCG-CG---UGGCGGgC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 52573 0.76 0.135815
Target:  5'- aCCGGCGCCucaGAGcCGCAgcacgcagccgacguCCGCCCGaGACg -3'
miRNA:   3'- gGGCCGCGG---CUC-GCGU---------------GGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 12167 0.76 0.137423
Target:  5'- gCCCGGaucgucgcCGCCGAcgccgccgcggccGgGCGCCGCUCGGACg -3'
miRNA:   3'- -GGGCC--------GCGGCU-------------CgCGUGGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 99785 0.76 0.137747
Target:  5'- gCCGGCGUcgacuaCGAGCGCG-CGCCgCGGGCg -3'
miRNA:   3'- gGGCCGCG------GCUCGCGUgGCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 62344 0.76 0.139049
Target:  5'- gCCC-GCGCCG-GCGCaccuggucucguuggACCGCUCGGACg -3'
miRNA:   3'- -GGGcCGCGGCuCGCG---------------UGGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 121369 0.76 0.141023
Target:  5'- -aCGGCGuCCGAGCcggcCGCCGCCgGGACc -3'
miRNA:   3'- ggGCCGC-GGCUCGc---GUGGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 66685 0.76 0.141023
Target:  5'- cCCCGGCGCCccaggcaaAGCGUACgccgCGCCCGGcACg -3'
miRNA:   3'- -GGGCCGCGGc-------UCGCGUG----GCGGGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 61152 0.76 0.144369
Target:  5'- gCCCGaCcCCGAGCGCGCgGUCCGGAUc -3'
miRNA:   3'- -GGGCcGcGGCUCGCGUGgCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 34836 0.76 0.144369
Target:  5'- gCCGGCGCCgGAGCGgGCgucggagcgggCGCCgCGGGCg -3'
miRNA:   3'- gGGCCGCGG-CUCGCgUG-----------GCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 36350 0.76 0.144369
Target:  5'- aCCCGGCGugcgcggccaCCGGGUGCG-CGCCCGcGGCg -3'
miRNA:   3'- -GGGCCGC----------GGCUCGCGUgGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 143271 0.76 0.144369
Target:  5'- gCCCGGC-CCG-GCGCcgGCCGCUCGGGg -3'
miRNA:   3'- -GGGCCGcGGCuCGCG--UGGCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 128316 0.75 0.147789
Target:  5'- aCCgUGGCGaCCGAGC---CCGCCCGGACg -3'
miRNA:   3'- -GG-GCCGC-GGCUCGcguGGCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.