miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 190204 0.75 0.147789
Target:  5'- cUCCaGCGCCGcGCGCACC-CgCCGGGCg -3'
miRNA:   3'- -GGGcCGCGGCuCGCGUGGcG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 64820 0.75 0.147789
Target:  5'- -aCGGCGgCGAGCcgGCGCCGacgaCCGGACg -3'
miRNA:   3'- ggGCCGCgGCUCG--CGUGGCg---GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 107212 0.75 0.151281
Target:  5'- gCCCGGCGCCGccgggcGGCGCGCgacgggggcggCGUCgCGGACc -3'
miRNA:   3'- -GGGCCGCGGC------UCGCGUG-----------GCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 188345 0.75 0.162214
Target:  5'- -gCGGCGCCGucGCGC-CCGUCCGGcCg -3'
miRNA:   3'- ggGCCGCGGCu-CGCGuGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 100835 0.75 0.162214
Target:  5'- gCCGGCaGCCGGGCuuccGCACCGCgCaGACg -3'
miRNA:   3'- gGGCCG-CGGCUCG----CGUGGCGgGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 184518 0.75 0.16872
Target:  5'- cCCCGcGCGCggcgCGGGCGaCGCCGCCCaccgccgccucuucGGACg -3'
miRNA:   3'- -GGGC-CGCG----GCUCGC-GUGGCGGG--------------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 114733 0.74 0.173852
Target:  5'- cUCCGGguuCGUCGAGCcgGCGCCGCCCGccGGCg -3'
miRNA:   3'- -GGGCC---GCGGCUCG--CGUGGCGGGC--CUG- -5'
11088 3' -66.2 NC_002794.1 + 100588 0.74 0.173852
Target:  5'- gCUCGG-GCCGuGCGCGCCGauCCCGGGg -3'
miRNA:   3'- -GGGCCgCGGCuCGCGUGGC--GGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 80414 0.74 0.177895
Target:  5'- gCCCagguGGCGCCGGGCGgggcCGCCGCCgGcGGCc -3'
miRNA:   3'- -GGG----CCGCGGCUCGC----GUGGCGGgC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 145317 0.74 0.177895
Target:  5'- aCCGGCGCgCGGcGgGCGgCGCUCGGGCc -3'
miRNA:   3'- gGGCCGCG-GCU-CgCGUgGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 151932 0.74 0.177895
Target:  5'- -gCGGCGCa-AGCGCuccGCCGCCCGcGACg -3'
miRNA:   3'- ggGCCGCGgcUCGCG---UGGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 194372 0.74 0.18202
Target:  5'- uCCCGcGUGCCcAGCcacaccagcuGCGCCGCCCGGuCg -3'
miRNA:   3'- -GGGC-CGCGGcUCG----------CGUGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 184464 0.74 0.185805
Target:  5'- gCCCGcGgGCCGcgcgaacGGCGCGCggggccccggaCGCCCGGGCg -3'
miRNA:   3'- -GGGC-CgCGGC-------UCGCGUG-----------GCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 47957 0.74 0.18623
Target:  5'- uCCCGGCGCCGgcugGGCG-ACCGCCgCGcGCu -3'
miRNA:   3'- -GGGCCGCGGC----UCGCgUGGCGG-GCcUG- -5'
11088 3' -66.2 NC_002794.1 + 104436 0.74 0.190525
Target:  5'- gCCCGGaCGCCGccgcgGGCG-GCCcgaGCCCGGGCg -3'
miRNA:   3'- -GGGCC-GCGGC-----UCGCgUGG---CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 59531 0.74 0.190525
Target:  5'- aCCCGGCGCUG-GCGCacgaguACCGCCaGuGGCa -3'
miRNA:   3'- -GGGCCGCGGCuCGCG------UGGCGGgC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 189659 0.74 0.190525
Target:  5'- gCCGGCugGCCGAGCGguCGCCccgGCCgGGACu -3'
miRNA:   3'- gGGCCG--CGGCUCGC--GUGG---CGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 67848 0.74 0.190525
Target:  5'- gCCCGGCGCCGccGCGCGUCaCCCGG-Cg -3'
miRNA:   3'- -GGGCCGCGGCu-CGCGUGGcGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 19336 0.74 0.194465
Target:  5'- aCCCGcGCGCCGGucacccccucgccGCccGCcCCGCCCGGAUc -3'
miRNA:   3'- -GGGC-CGCGGCU-------------CG--CGuGGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 62762 0.74 0.194907
Target:  5'- cUCCGGCuCCGGcuguuucgccGCGCGCCGCcuCCGGGCc -3'
miRNA:   3'- -GGGCCGcGGCU----------CGCGUGGCG--GGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.