miRNA display CGI


Results 61 - 80 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 23900 0.74 0.194907
Target:  5'- gCCCGGgaGCCGAGUGCAgCaGCgUGGGCg -3'
miRNA:   3'- -GGGCCg-CGGCUCGCGUgG-CGgGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 62762 0.74 0.194907
Target:  5'- cUCCGGCuCCGGcuguuucgccGCGCGCCGCcuCCGGGCc -3'
miRNA:   3'- -GGGCCGcGGCU----------CGCGUGGCG--GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 131286 0.74 0.194907
Target:  5'- gCCGGCGCCGucGCucCGCCGCCCGuGGu -3'
miRNA:   3'- gGGCCGCGGCu-CGc-GUGGCGGGC-CUg -5'
11088 3' -66.2 NC_002794.1 + 180692 0.74 0.199377
Target:  5'- uCCCGGCGCCcggcGGGCGgACCaugGCUCGGGu -3'
miRNA:   3'- -GGGCCGCGG----CUCGCgUGG---CGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 58872 0.74 0.199377
Target:  5'- aCCGGCaGCCGuGCGCGCCGCgcagcUCGaGGCc -3'
miRNA:   3'- gGGCCG-CGGCuCGCGUGGCG-----GGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 193818 0.74 0.199377
Target:  5'- gUCUGGCGCCGAcGCGuCGCgGCgCCGGcACu -3'
miRNA:   3'- -GGGCCGCGGCU-CGC-GUGgCG-GGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 123741 0.73 0.203936
Target:  5'- aCCgGGCGuucCCGAGcCGUGCCGCuucCCGGGCg -3'
miRNA:   3'- -GGgCCGC---GGCUC-GCGUGGCG---GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 84924 0.73 0.208116
Target:  5'- aCCCGGCGCgGAGCGCuccccacacgcggAgCGCCCccGGCa -3'
miRNA:   3'- -GGGCCGCGgCUCGCG-------------UgGCGGGc-CUG- -5'
11088 3' -66.2 NC_002794.1 + 29750 0.73 0.208585
Target:  5'- aCCgGGCGCCGAGCccGCGCCGagcguCUCGGcCg -3'
miRNA:   3'- -GGgCCGCGGCUCG--CGUGGC-----GGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 135520 0.73 0.208585
Target:  5'- aCCGGaCGCUc-GCGCGCCGCUCGGuCg -3'
miRNA:   3'- gGGCC-GCGGcuCGCGUGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 67733 0.73 0.213326
Target:  5'- uCCCGGCGgCG-GC-CACCcgaGCCCGGAUc -3'
miRNA:   3'- -GGGCCGCgGCuCGcGUGG---CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 107754 0.73 0.213326
Target:  5'- uUCGcGCGCCgcuggcugGAGCGCGCuCGCCCGG-Cg -3'
miRNA:   3'- gGGC-CGCGG--------CUCGCGUG-GCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 76538 0.73 0.217671
Target:  5'- gCCgCGGCGCCGAcgcggucGCGCGCCGgguacucaCCCGGcCc -3'
miRNA:   3'- -GG-GCCGCGGCU-------CGCGUGGC--------GGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 150030 0.73 0.221103
Target:  5'- aCCCGGcCGCCGAGUGgaGCCGCUaccgacugcggugGGACg -3'
miRNA:   3'- -GGGCC-GCGGCUCGCg-UGGCGGg------------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 49249 0.73 0.221597
Target:  5'- aCgGGCGCCcgcgcacccacgacGGGCGCuccaACgGCCCGGGCg -3'
miRNA:   3'- gGgCCGCGG--------------CUCGCG----UGgCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 184830 0.73 0.222588
Target:  5'- ---cGCGuCCGGGCGCACCGCgcagcgauacgugCCGGACg -3'
miRNA:   3'- gggcCGC-GGCUCGCGUGGCG-------------GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 16934 0.73 0.228104
Target:  5'- gUCGGCGCCGAGcCGcCACCGCCUc--- -3'
miRNA:   3'- gGGCCGCGGCUC-GC-GUGGCGGGccug -5'
11088 3' -66.2 NC_002794.1 + 124138 0.72 0.232704
Target:  5'- cUCCGGCGCCcggGAGCGguCUccgcgggGCCCGGGa -3'
miRNA:   3'- -GGGCCGCGG---CUCGCguGG-------CGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 183672 0.72 0.23322
Target:  5'- gCCCGaGCGCCGAcgggucgaGCGCccGCCGCgCGcGGCg -3'
miRNA:   3'- -GGGC-CGCGGCU--------CGCG--UGGCGgGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 68745 0.72 0.23322
Target:  5'- cCCCGGagGCCGAcugaGcCGgGCCGCCgGGGCg -3'
miRNA:   3'- -GGGCCg-CGGCU----C-GCgUGGCGGgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.