miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 82740 0.66 0.564484
Target:  5'- gCCGcGaGCCGccGC-CACCGCCgCGGACu -3'
miRNA:   3'- gGGC-CgCGGCu-CGcGUGGCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 153411 0.66 0.564484
Target:  5'- uCgCGaGCGCCGcGCGCggaGCCGagCUGGGCg -3'
miRNA:   3'- -GgGC-CGCGGCuCGCG---UGGCg-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 184160 0.66 0.563566
Target:  5'- gCCGGCGacggcgucuccacCCGAcacCGCGgCGCCCGG-Cg -3'
miRNA:   3'- gGGCCGC-------------GGCUc--GCGUgGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 128922 0.66 0.563566
Target:  5'- aCCUGGuCGCCGAcgacgaacguccgGUGgaGCCuGCgCCGGACg -3'
miRNA:   3'- -GGGCC-GCGGCU-------------CGCg-UGG-CG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 17022 0.66 0.561732
Target:  5'- aCCCGGCGgcggucccauggaaCUGAGacccucCGCgACCuGUCCGGGCg -3'
miRNA:   3'- -GGGCCGC--------------GGCUC------GCG-UGG-CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 91235 0.66 0.555325
Target:  5'- gCgCGGCgGCCGucGgGCugCGCUcgCGGACg -3'
miRNA:   3'- -GgGCCG-CGGCu-CgCGugGCGG--GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 10649 0.66 0.555325
Target:  5'- -gCGGCGCgagcccgaCGAGCGUcuggaGCCGCCUGaGCu -3'
miRNA:   3'- ggGCCGCG--------GCUCGCG-----UGGCGGGCcUG- -5'
11088 3' -66.2 NC_002794.1 + 22000 0.66 0.555325
Target:  5'- gCCGGCaaGCCGgccaaGGCGUgcgaaACCuGCUCGGAUa -3'
miRNA:   3'- gGGCCG--CGGC-----UCGCG-----UGG-CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 90201 0.66 0.555325
Target:  5'- -aCGGUGCCc-GCGCcuccgcccGCCGCgCCGGAg -3'
miRNA:   3'- ggGCCGCGGcuCGCG--------UGGCG-GGCCUg -5'
11088 3' -66.2 NC_002794.1 + 179614 0.66 0.555325
Target:  5'- -gCGGCG-CGAGCG-ACUGCC-GGGCg -3'
miRNA:   3'- ggGCCGCgGCUCGCgUGGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 152438 0.66 0.555325
Target:  5'- gUCGGCaGCUGGGCuacGCguaCGaCCCGGACg -3'
miRNA:   3'- gGGCCG-CGGCUCG---CGug-GC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 12555 0.66 0.555325
Target:  5'- -aCGGCuaCCG-GCGCAUCGCCaCGGuCu -3'
miRNA:   3'- ggGCCGc-GGCuCGCGUGGCGG-GCCuG- -5'
11088 3' -66.2 NC_002794.1 + 119501 0.66 0.555325
Target:  5'- cCUCGGgGUCGucggcGGCGCggaGCCGgCCgCGGACc -3'
miRNA:   3'- -GGGCCgCGGC-----UCGCG---UGGC-GG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 138747 0.66 0.555325
Target:  5'- cCCCGGCccuccggggGCCGAGuCGCGgCGgUCGGu- -3'
miRNA:   3'- -GGGCCG---------CGGCUC-GCGUgGCgGGCCug -5'
11088 3' -66.2 NC_002794.1 + 58544 0.66 0.554411
Target:  5'- gCCgCGGCGCgCGcgcugcuGGCGCGCUGCgCGaACg -3'
miRNA:   3'- -GG-GCCGCG-GC-------UCGCGUGGCGgGCcUG- -5'
11088 3' -66.2 NC_002794.1 + 119727 0.66 0.554411
Target:  5'- uUCGGCaCCGGGCGCucggcguguuugcGCaGCuCCGGACc -3'
miRNA:   3'- gGGCCGcGGCUCGCG-------------UGgCG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 149212 0.66 0.554411
Target:  5'- aUCCGGCugGCCGgaagcgaGGCGcCGCCGCcgucgCCGGGg -3'
miRNA:   3'- -GGGCCG--CGGC-------UCGC-GUGGCG-----GGCCUg -5'
11088 3' -66.2 NC_002794.1 + 24030 0.66 0.552585
Target:  5'- cCUCGGCGacggcggucccuccCCGucCGC-CCGcCCCGGACc -3'
miRNA:   3'- -GGGCCGC--------------GGCucGCGuGGC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 113853 0.66 0.546209
Target:  5'- gCCUGGCgugcaguuccgGCCaGGCGCGCuCGgCCGcGGCg -3'
miRNA:   3'- -GGGCCG-----------CGGcUCGCGUG-GCgGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 86702 0.66 0.546209
Target:  5'- gCCCGGuCGCuCGucgaaGCCGCCCGGcCa -3'
miRNA:   3'- -GGGCC-GCG-GCucgcgUGGCGGGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.