miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 48038 0.66 0.546209
Target:  5'- gCCGGaCGCCGAGUGCGug--CUGGGCa -3'
miRNA:   3'- gGGCC-GCGGCUCGCGUggcgGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 99267 0.66 0.546209
Target:  5'- gCUCGGgGgcuCCG-GCGCGCU-CCCGGGCu -3'
miRNA:   3'- -GGGCCgC---GGCuCGCGUGGcGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 77963 0.66 0.546209
Target:  5'- gCCGuCGCCGAGcCGacuccuCCGCCuCGGAa -3'
miRNA:   3'- gGGCcGCGGCUC-GCgu----GGCGG-GCCUg -5'
11088 3' -66.2 NC_002794.1 + 120131 0.66 0.546209
Target:  5'- -aCGGCGaCCGGGgaCGgGCCGgugCCGGACg -3'
miRNA:   3'- ggGCCGC-GGCUC--GCgUGGCg--GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 136941 0.66 0.546209
Target:  5'- -aCGGCGCCGAGauaGUccCCGCaggGGACg -3'
miRNA:   3'- ggGCCGCGGCUCg--CGu-GGCGgg-CCUG- -5'
11088 3' -66.2 NC_002794.1 + 185550 0.66 0.546209
Target:  5'- aCCCG--GCCGcGCGCcCCGCCCugccgcggcaGGGCg -3'
miRNA:   3'- -GGGCcgCGGCuCGCGuGGCGGG----------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 71981 0.66 0.546209
Target:  5'- uCCCGGCggaGCCgGAGcCGaUACCG-CCGGAg -3'
miRNA:   3'- -GGGCCG---CGG-CUC-GC-GUGGCgGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 113853 0.66 0.546209
Target:  5'- gCCUGGCgugcaguuccgGCCaGGCGCGCuCGgCCGcGGCg -3'
miRNA:   3'- -GGGCCG-----------CGGcUCGCGUG-GCgGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 86702 0.66 0.546209
Target:  5'- gCCCGGuCGCuCGucgaaGCCGCCCGGcCa -3'
miRNA:   3'- -GGGCC-GCG-GCucgcgUGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 40550 0.66 0.546209
Target:  5'- gCCGGCGgcaUGAGCuucucguucGCGCCGUCCuGGCc -3'
miRNA:   3'- gGGCCGCg--GCUCG---------CGUGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 39699 0.66 0.546209
Target:  5'- gCCCGGCaccGCCG-GCGCuACCGaCCGcuGCa -3'
miRNA:   3'- -GGGCCG---CGGCuCGCG-UGGCgGGCc-UG- -5'
11088 3' -66.2 NC_002794.1 + 183375 0.66 0.5453
Target:  5'- uCCCGGCcgugccccgucccGCCGAGCuGCAgCaacaGCCaCGGGa -3'
miRNA:   3'- -GGGCCG-------------CGGCUCG-CGU-Gg---CGG-GCCUg -5'
11088 3' -66.2 NC_002794.1 + 96212 0.66 0.544392
Target:  5'- gCCGGCGCUGGGUcaggaguucuaucGCuucgucaACgGCCCGGuCu -3'
miRNA:   3'- gGGCCGCGGCUCG-------------CG-------UGgCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 35819 0.66 0.537142
Target:  5'- nCCCGGUuuCCGGGC-CGCCGCCaCGaACc -3'
miRNA:   3'- -GGGCCGc-GGCUCGcGUGGCGG-GCcUG- -5'
11088 3' -66.2 NC_002794.1 + 144041 0.66 0.537142
Target:  5'- cUCCGGCGCCuGGC-CGCCgucgacuucucGCCC-GACg -3'
miRNA:   3'- -GGGCCGCGGcUCGcGUGG-----------CGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 143409 0.66 0.537142
Target:  5'- aCCGGCgcggGCCGGGCGaag-GUCCGGAa -3'
miRNA:   3'- gGGCCG----CGGCUCGCguggCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 136708 0.66 0.537142
Target:  5'- gCCCGGUGCa-GGCGC-CgGuCCCGG-Cg -3'
miRNA:   3'- -GGGCCGCGgcUCGCGuGgC-GGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 43345 0.66 0.537142
Target:  5'- gCCGGUugaaGuCCGAGUGCG--GCUCGGACa -3'
miRNA:   3'- gGGCCG----C-GGCUCGCGUggCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 179245 0.66 0.537142
Target:  5'- gUCGGCGUCG-GCGagACCGCCgcCGaGACg -3'
miRNA:   3'- gGGCCGCGGCuCGCg-UGGCGG--GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 118733 0.66 0.537142
Target:  5'- aCUgGGCGCUGcucGGCGCGCUcagGCCCagguGACg -3'
miRNA:   3'- -GGgCCGCGGC---UCGCGUGG---CGGGc---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.