miRNA display CGI


Results 61 - 80 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 35819 0.66 0.537142
Target:  5'- nCCCGGUuuCCGGGC-CGCCGCCaCGaACc -3'
miRNA:   3'- -GGGCCGc-GGCUCGcGUGGCGG-GCcUG- -5'
11088 3' -66.2 NC_002794.1 + 144041 0.66 0.537142
Target:  5'- cUCCGGCGCCuGGC-CGCCgucgacuucucGCCC-GACg -3'
miRNA:   3'- -GGGCCGCGGcUCGcGUGG-----------CGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 143409 0.66 0.537142
Target:  5'- aCCGGCgcggGCCGGGCGaag-GUCCGGAa -3'
miRNA:   3'- gGGCCG----CGGCUCGCguggCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 136708 0.66 0.537142
Target:  5'- gCCCGGUGCa-GGCGC-CgGuCCCGG-Cg -3'
miRNA:   3'- -GGGCCGCGgcUCGCGuGgC-GGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 43345 0.66 0.537142
Target:  5'- gCCGGUugaaGuCCGAGUGCG--GCUCGGACa -3'
miRNA:   3'- gGGCCG----C-GGCUCGCGUggCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 179245 0.66 0.537142
Target:  5'- gUCGGCGUCG-GCGagACCGCCgcCGaGACg -3'
miRNA:   3'- gGGCCGCGGCuCGCg-UGGCGG--GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 181760 0.66 0.537142
Target:  5'- gCCCGcugaCGCCGAugGCGCcgcGCCGCCgcgucucguuCGGGCc -3'
miRNA:   3'- -GGGCc---GCGGCU--CGCG---UGGCGG----------GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 37738 0.66 0.536239
Target:  5'- -gCGGCGCCGccggcggcggcgcGGCgGCGCCGgCgGGAg -3'
miRNA:   3'- ggGCCGCGGC-------------UCG-CGUGGCgGgCCUg -5'
11088 3' -66.2 NC_002794.1 + 11986 0.66 0.53353
Target:  5'- gUCCGGCggcugguugcuGCUGuguggacugauguGCGcCGCCgGCCCGGGCg -3'
miRNA:   3'- -GGGCCG-----------CGGCu------------CGC-GUGG-CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 152230 0.66 0.528128
Target:  5'- gUCGcGCGCCacgucgcGCGCACCGUcgccgUCGGACa -3'
miRNA:   3'- gGGC-CGCGGcu-----CGCGUGGCG-----GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 80793 0.66 0.528128
Target:  5'- aCCuGCGCCGcGUGCuccuccaCGCCCGG-Cg -3'
miRNA:   3'- gGGcCGCGGCuCGCGug-----GCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 60337 0.66 0.528128
Target:  5'- aCCUGGCGCaccGCG-ACCGCCuCGGcuACa -3'
miRNA:   3'- -GGGCCGCGgcuCGCgUGGCGG-GCC--UG- -5'
11088 3' -66.2 NC_002794.1 + 188371 0.66 0.528128
Target:  5'- -gCGGCgGCCGAGgGCGuuCU-CCCGGGCu -3'
miRNA:   3'- ggGCCG-CGGCUCgCGU--GGcGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 141249 0.66 0.528128
Target:  5'- aCCCGGCGCCG-GU---CCGUucaaCUGGACg -3'
miRNA:   3'- -GGGCCGCGGCuCGcguGGCG----GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 186277 0.66 0.528128
Target:  5'- gCCUGGCGC--GGCgGCACCGCggCCaGGCg -3'
miRNA:   3'- -GGGCCGCGgcUCG-CGUGGCG--GGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 107516 0.66 0.528128
Target:  5'- gCCGGUcgacgccgacgGCCG-GCGCGgCGCCgGcGGCg -3'
miRNA:   3'- gGGCCG-----------CGGCuCGCGUgGCGGgC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 56174 0.66 0.519171
Target:  5'- cCCCGGUGCaCGuAGaGCACCgGgCCGcGGCa -3'
miRNA:   3'- -GGGCCGCG-GC-UCgCGUGG-CgGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 184029 0.66 0.519171
Target:  5'- gCCaCGGCaCCGcgcgcAGCGCGCgGUCgCGGGCc -3'
miRNA:   3'- -GG-GCCGcGGC-----UCGCGUGgCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 124269 0.66 0.519171
Target:  5'- gCCGGCcaGCCGc-CGCGCCGUCCGu-- -3'
miRNA:   3'- gGGCCG--CGGCucGCGUGGCGGGCcug -5'
11088 3' -66.2 NC_002794.1 + 125320 0.66 0.519171
Target:  5'- gCCC-GCGCCGAGCcggaGCG-CGCCaCGGcGCa -3'
miRNA:   3'- -GGGcCGCGGCUCG----CGUgGCGG-GCC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.