miRNA display CGI


Results 81 - 100 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 29923 0.66 0.519171
Target:  5'- aCgGGCaGCgaCGAGC-CGCCGUCCGGGa -3'
miRNA:   3'- gGgCCG-CG--GCUCGcGUGGCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 87053 0.66 0.519171
Target:  5'- gCUCGGgGCCGGGUccuguagcgacaGCACgGUgcaggCCGGGCg -3'
miRNA:   3'- -GGGCCgCGGCUCG------------CGUGgCG-----GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 72453 0.66 0.519171
Target:  5'- -gCGGCGCCccGCGC-CCGgcCCCGcGGCg -3'
miRNA:   3'- ggGCCGCGGcuCGCGuGGC--GGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 66915 0.66 0.519171
Target:  5'- cUCCGGcCGCCGAucccccuccGC-CACCGCCCccgaGGCc -3'
miRNA:   3'- -GGGCC-GCGGCU---------CGcGUGGCGGGc---CUG- -5'
11088 3' -66.2 NC_002794.1 + 57404 0.66 0.519171
Target:  5'- cUCCGGCGCCcgcguggccGGCGUGCUGgUCGGcACg -3'
miRNA:   3'- -GGGCCGCGGc--------UCGCGUGGCgGGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 125320 0.66 0.519171
Target:  5'- gCCC-GCGCCGAGCcggaGCG-CGCCaCGGcGCa -3'
miRNA:   3'- -GGGcCGCGGCUCG----CGUgGCGG-GCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 124269 0.66 0.519171
Target:  5'- gCCGGCcaGCCGc-CGCGCCGUCCGu-- -3'
miRNA:   3'- gGGCCG--CGGCucGCGUGGCGGGCcug -5'
11088 3' -66.2 NC_002794.1 + 184029 0.66 0.519171
Target:  5'- gCCaCGGCaCCGcgcgcAGCGCGCgGUCgCGGGCc -3'
miRNA:   3'- -GG-GCCGcGGC-----UCGCGUGgCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 56174 0.66 0.519171
Target:  5'- cCCCGGUGCaCGuAGaGCACCgGgCCGcGGCa -3'
miRNA:   3'- -GGGCCGCG-GC-UCgCGUGG-CgGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 185756 0.66 0.519171
Target:  5'- gUCCaGcCGCCG-GCGCgGCCGCCCGucACa -3'
miRNA:   3'- -GGGcC-GCGGCuCGCG-UGGCGGGCc-UG- -5'
11088 3' -66.2 NC_002794.1 + 111991 0.66 0.516495
Target:  5'- aCCGGCacGCCcuGCGCggucaccagucggcGCCGCCCGaaGGCg -3'
miRNA:   3'- gGGCCG--CGGcuCGCG--------------UGGCGGGC--CUG- -5'
11088 3' -66.2 NC_002794.1 + 187571 0.67 0.510274
Target:  5'- gCCCGuaccCGCCGucGGCGCgGCCGCCguCGcGACg -3'
miRNA:   3'- -GGGCc---GCGGC--UCGCG-UGGCGG--GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 180874 0.67 0.510274
Target:  5'- -gCGGCGgauCCG-GCGCGCCcggucucgGCCgCGGACu -3'
miRNA:   3'- ggGCCGC---GGCuCGCGUGG--------CGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 127357 0.67 0.510274
Target:  5'- uCgCGGCGgCG-GCGCgGCCGCUcgugucggCGGACg -3'
miRNA:   3'- -GgGCCGCgGCuCGCG-UGGCGG--------GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 48318 0.67 0.510274
Target:  5'- aCCGGCuUCGuGCaCACgGCCCGGuACu -3'
miRNA:   3'- gGGCCGcGGCuCGcGUGgCGGGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 187901 0.67 0.510274
Target:  5'- gCgCGGUGCCGcuCGC-CCGC-CGGGCc -3'
miRNA:   3'- -GgGCCGCGGCucGCGuGGCGgGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 78325 0.67 0.510274
Target:  5'- uCCCGGCGCgaCGGGCGgaGgCG-CCGGAa -3'
miRNA:   3'- -GGGCCGCG--GCUCGCg-UgGCgGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 63232 0.67 0.510274
Target:  5'- cCCCuGCGCCuc-CGCGCCGaacgggacuuucUCCGGACg -3'
miRNA:   3'- -GGGcCGCGGcucGCGUGGC------------GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 157311 0.67 0.510274
Target:  5'- aCgCGGCGCuCGAagacgaagacGCGCGuCCGgucgaCCGGACg -3'
miRNA:   3'- -GgGCCGCG-GCU----------CGCGU-GGCg----GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 113296 0.67 0.510274
Target:  5'- gCUCGGCGC--AGCGCucguCCGCuacccgCCGGGCc -3'
miRNA:   3'- -GGGCCGCGgcUCGCGu---GGCG------GGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.