miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 13745 0.67 0.492676
Target:  5'- uCCCGGCcgGCCGAcaccaGaCuCGCCGCcCCGGAg -3'
miRNA:   3'- -GGGCCG--CGGCU-----C-GcGUGGCG-GGCCUg -5'
11088 3' -66.2 NC_002794.1 + 14513 0.69 0.386171
Target:  5'- uCgCGGCGCuCGuG-GCGCCGCUCGGcCa -3'
miRNA:   3'- -GgGCCGCG-GCuCgCGUGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 14576 0.69 0.393817
Target:  5'- gCCGGcCGaCCGaAGCGgGCCGUggcgagcgcgCCGGGCa -3'
miRNA:   3'- gGGCC-GC-GGC-UCGCgUGGCG----------GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 14653 0.71 0.289794
Target:  5'- gCCGGCGCCGcGGCGUcgguCCGaCUCGcGGCg -3'
miRNA:   3'- gGGCCGCGGC-UCGCGu---GGC-GGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 14704 0.67 0.466821
Target:  5'- -aCGGCGUgGGGaGCGCUGCUCGcGGCu -3'
miRNA:   3'- ggGCCGCGgCUCgCGUGGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 15185 0.67 0.466821
Target:  5'- gCCGGaGaCCGGGUGaacgACCGCCCGcGAUg -3'
miRNA:   3'- gGGCCgC-GGCUCGCg---UGGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 16934 0.73 0.228104
Target:  5'- gUCGGCGCCGAGcCGcCACCGCCUc--- -3'
miRNA:   3'- gGGCCGCGGCUC-GC-GUGGCGGGccug -5'
11088 3' -66.2 NC_002794.1 + 17022 0.66 0.561732
Target:  5'- aCCCGGCGgcggucccauggaaCUGAGacccucCGCgACCuGUCCGGGCg -3'
miRNA:   3'- -GGGCCGC--------------GGCUC------GCG-UGG-CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 17137 0.68 0.441685
Target:  5'- gCCGGCGaaaCG-GCgGUAgCGCCCGuGACg -3'
miRNA:   3'- gGGCCGCg--GCuCG-CGUgGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 17264 0.69 0.378625
Target:  5'- aCCCGGCucgucacCCGGGCaCGCCGCCgCcGACg -3'
miRNA:   3'- -GGGCCGc------GGCUCGcGUGGCGG-GcCUG- -5'
11088 3' -66.2 NC_002794.1 + 17624 0.69 0.356585
Target:  5'- cCCCGccGCGgCGAGCGauccCGCCGCCgCGGcCg -3'
miRNA:   3'- -GGGC--CGCgGCUCGC----GUGGCGG-GCCuG- -5'
11088 3' -66.2 NC_002794.1 + 17945 0.69 0.371177
Target:  5'- aCCUGGCgGCCaccCGCGacUCGCCCGGGCc -3'
miRNA:   3'- -GGGCCG-CGGcucGCGU--GGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 18276 0.7 0.313956
Target:  5'- gCgCGGCGCCGAGCcuucgaaccgaGCCGCCCucucgaGGGCc -3'
miRNA:   3'- -GgGCCGCGGCUCGcg---------UGGCGGG------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 18832 0.71 0.289794
Target:  5'- gCCGGCGCggaggagaccuCGAGCGCGCCGUCgCcGAUc -3'
miRNA:   3'- gGGCCGCG-----------GCUCGCGUGGCGG-GcCUG- -5'
11088 3' -66.2 NC_002794.1 + 18886 0.83 0.045002
Target:  5'- gCCGGCGCgGAGCGuCACCccuccccgacggcGCCCGGACu -3'
miRNA:   3'- gGGCCGCGgCUCGC-GUGG-------------CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 19336 0.74 0.194465
Target:  5'- aCCCGcGCGCCGGucacccccucgccGCccGCcCCGCCCGGAUc -3'
miRNA:   3'- -GGGC-CGCGGCU-------------CG--CGuGGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 19413 0.67 0.461734
Target:  5'- aCCCGGa-UCGGGCGCGCCcuccuccgcgaccagGCCCcgagcGGGCa -3'
miRNA:   3'- -GGGCCgcGGCUCGCGUGG---------------CGGG-----CCUG- -5'
11088 3' -66.2 NC_002794.1 + 19504 0.69 0.371177
Target:  5'- -aCGGCGgaGGuCGCGCCGCUCGGAg -3'
miRNA:   3'- ggGCCGCggCUcGCGUGGCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 19530 0.7 0.335463
Target:  5'- gCCGGCGCgGcGCGgccCGCCGgugucggaCCCGGACu -3'
miRNA:   3'- gGGCCGCGgCuCGC---GUGGC--------GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 19599 0.7 0.342401
Target:  5'- gCCCGGCgagcgGCCGAGC-CACCGaCUC-GACg -3'
miRNA:   3'- -GGGCCG-----CGGCUCGcGUGGC-GGGcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.