miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 19654 0.72 0.24374
Target:  5'- cCCCGGCGCUGGGUcuucucggaGUuucuccgcuACCGCCCGcaGACg -3'
miRNA:   3'- -GGGCCGCGGCUCG---------CG---------UGGCGGGC--CUG- -5'
11088 3' -66.2 NC_002794.1 + 19778 0.67 0.506733
Target:  5'- aCCaGCuCCGGGUGCuccugacgcugcuCCGCUCGGACc -3'
miRNA:   3'- gGGcCGcGGCUCGCGu------------GGCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 19959 0.66 0.573682
Target:  5'- gCgGGCuUCGAGCuGCgGCCGCCCuucGGGCu -3'
miRNA:   3'- gGgCCGcGGCUCG-CG-UGGCGGG---CCUG- -5'
11088 3' -66.2 NC_002794.1 + 20429 0.69 0.371177
Target:  5'- aCCCcGCGCCGGaggacGUGCACCG-CUGGAg -3'
miRNA:   3'- -GGGcCGCGGCU-----CGCGUGGCgGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 21704 0.66 0.564484
Target:  5'- cCUCGGCGUccaCGGGCGCugCGUCgCGa-- -3'
miRNA:   3'- -GGGCCGCG---GCUCGCGugGCGG-GCcug -5'
11088 3' -66.2 NC_002794.1 + 22000 0.66 0.555325
Target:  5'- gCCGGCaaGCCGgccaaGGCGUgcgaaACCuGCUCGGAUa -3'
miRNA:   3'- gGGCCG--CGGC-----UCGCG-----UGG-CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 22425 0.66 0.564484
Target:  5'- aCCCaGUGUCGGG-GaCACCGgUCUGGACa -3'
miRNA:   3'- -GGGcCGCGGCUCgC-GUGGC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 23617 0.67 0.483983
Target:  5'- cCCCgcgGGCGCCcGGaCGCGCgGCCCucGACc -3'
miRNA:   3'- -GGG---CCGCGGcUC-GCGUGgCGGGc-CUG- -5'
11088 3' -66.2 NC_002794.1 + 23900 0.74 0.194907
Target:  5'- gCCCGGgaGCCGAGUGCAgCaGCgUGGGCg -3'
miRNA:   3'- -GGGCCg-CGGCUCGCGUgG-CGgGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 23983 0.66 0.564484
Target:  5'- gCCGGCGCCaccGuCGCuCCGUCC-GACg -3'
miRNA:   3'- gGGCCGCGGcu-C-GCGuGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 24030 0.66 0.552585
Target:  5'- cCUCGGCGacggcggucccuccCCGucCGC-CCGcCCCGGACc -3'
miRNA:   3'- -GGGCCGC--------------GGCucGCGuGGC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 24074 0.67 0.501441
Target:  5'- aCCCGuGCGCCcgggcGGGCGuCGCCGUauuaaagaCCGcGACc -3'
miRNA:   3'- -GGGC-CGCGG-----CUCGC-GUGGCG--------GGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 26105 0.67 0.483983
Target:  5'- cCCCGGCgaucGCCGuGgGC-CUGCCUcGACg -3'
miRNA:   3'- -GGGCCG----CGGCuCgCGuGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 29750 0.73 0.208585
Target:  5'- aCCgGGCGCCGAGCccGCGCCGagcguCUCGGcCg -3'
miRNA:   3'- -GGgCCGCGGCUCG--CGUGGC-----GGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 29923 0.66 0.519171
Target:  5'- aCgGGCaGCgaCGAGC-CGCCGUCCGGGa -3'
miRNA:   3'- gGgCCG-CG--GCUCGcGUGGCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 30101 0.7 0.349442
Target:  5'- gCCGGUcCCGAcC-CACCGCCCGGGu -3'
miRNA:   3'- gGGCCGcGGCUcGcGUGGCGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 31336 0.66 0.519171
Target:  5'- gCUCGGCGCCcgccGUGUccGCCGCCCGc-- -3'
miRNA:   3'- -GGGCCGCGGcu--CGCG--UGGCGGGCcug -5'
11088 3' -66.2 NC_002794.1 + 32273 0.66 0.564484
Target:  5'- gCCGGCcgaucGgCGAGCGaCGCCGCCgccgcCGcGGCg -3'
miRNA:   3'- gGGCCG-----CgGCUCGC-GUGGCGG-----GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 33440 0.72 0.265386
Target:  5'- uCCCGGUGCaggaccuCGGGCG-GCCGCC-GGACg -3'
miRNA:   3'- -GGGCCGCG-------GCUCGCgUGGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 34082 0.77 0.111273
Target:  5'- gCCGGCgGCCGGGCaGCcgucggGCgGCCCGGACc -3'
miRNA:   3'- gGGCCG-CGGCUCG-CG------UGgCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.