miRNA display CGI


Results 61 - 80 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 34717 0.66 0.537142
Target:  5'- gCCGGCGCCacgaGGCGCgggcgGCCGCagagcgCGcGACg -3'
miRNA:   3'- gGGCCGCGGc---UCGCG-----UGGCGg-----GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 34781 0.71 0.283683
Target:  5'- gCCCGcGCcaGCCGAGUcgGCcgaACCgGCCCGGGCc -3'
miRNA:   3'- -GGGC-CG--CGGCUCG--CG---UGG-CGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 34836 0.76 0.144369
Target:  5'- gCCGGCGCCgGAGCGgGCgucggagcgggCGCCgCGGGCg -3'
miRNA:   3'- gGGCCGCGG-CUCGCgUG-----------GCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 35153 0.66 0.546209
Target:  5'- gCUCGuGuCGaCCGAGgaGCACCGCgCGGAg -3'
miRNA:   3'- -GGGC-C-GC-GGCUCg-CGUGGCGgGCCUg -5'
11088 3' -66.2 NC_002794.1 + 35550 0.72 0.238431
Target:  5'- aCCCGGCGCuCGcGCGCGCgcguggugGCCCaGGCg -3'
miRNA:   3'- -GGGCCGCG-GCuCGCGUGg-------CGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 35783 0.71 0.283683
Target:  5'- gCCGGCGUCGucuccGGCGUgacccugcGCC-CCCGGACc -3'
miRNA:   3'- gGGCCGCGGC-----UCGCG--------UGGcGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 35819 0.66 0.537142
Target:  5'- nCCCGGUuuCCGGGC-CGCCGCCaCGaACc -3'
miRNA:   3'- -GGGCCGc-GGCUCGcGUGGCGG-GCcUG- -5'
11088 3' -66.2 NC_002794.1 + 36350 0.76 0.144369
Target:  5'- aCCCGGCGugcgcggccaCCGGGUGCG-CGCCCGcGGCg -3'
miRNA:   3'- -GGGCCGC----------GGCUCGCGUgGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 37140 0.66 0.573682
Target:  5'- gCCGG-GUCGAGgGCGCagcuccaguCGCuCCGGAUc -3'
miRNA:   3'- gGGCCgCGGCUCgCGUG---------GCG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 37738 0.66 0.536239
Target:  5'- -gCGGCGCCGccggcggcggcgcGGCgGCGCCGgCgGGAg -3'
miRNA:   3'- ggGCCGCGGC-------------UCG-CGUGGCgGgCCUg -5'
11088 3' -66.2 NC_002794.1 + 38102 0.67 0.465122
Target:  5'- aCCGGCGUgaagacgcgggaGAGcCGCGCCaGCUgGGGCg -3'
miRNA:   3'- gGGCCGCGg-----------CUC-GCGUGG-CGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 38458 0.68 0.449979
Target:  5'- gCCGGCGCgGccgcGGCGCGCC-CUuuaUGGGCg -3'
miRNA:   3'- gGGCCGCGgC----UCGCGUGGcGG---GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 38502 0.67 0.492676
Target:  5'- -gCGGCGCCGGuCGcCGCCGCCUccGCg -3'
miRNA:   3'- ggGCCGCGGCUcGC-GUGGCGGGccUG- -5'
11088 3' -66.2 NC_002794.1 + 38570 0.69 0.371177
Target:  5'- gCCGGCGCCucgacgGAGUcgGCCGCCuccuccCGGACg -3'
miRNA:   3'- gGGCCGCGG------CUCGcgUGGCGG------GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 38701 0.67 0.483983
Target:  5'- gCCGcGcCGUCGAGCGCcccgGCCGCCgaaauggGGACc -3'
miRNA:   3'- gGGC-C-GCGGCUCGCG----UGGCGGg------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 39699 0.66 0.546209
Target:  5'- gCCCGGCaccGCCG-GCGCuACCGaCCGcuGCa -3'
miRNA:   3'- -GGGCCG---CGGCuCGCG-UGGCgGGCc-UG- -5'
11088 3' -66.2 NC_002794.1 + 39796 0.67 0.492676
Target:  5'- cCCCgGGCGCCGAcCGUuuuUCGCCCGc-- -3'
miRNA:   3'- -GGG-CCGCGGCUcGCGu--GGCGGGCcug -5'
11088 3' -66.2 NC_002794.1 + 40550 0.66 0.546209
Target:  5'- gCCGGCGgcaUGAGCuucucguucGCGCCGUCCuGGCc -3'
miRNA:   3'- gGGCCGCg--GCUCG---------CGUGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 42461 0.67 0.501441
Target:  5'- uCCaUGGCGUCGuccauGuCGCGCgCGCCgGGGCc -3'
miRNA:   3'- -GG-GCCGCGGCu----C-GCGUG-GCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 43168 0.67 0.492676
Target:  5'- gCUCGGCGaCGGaauagcgguugcGCGCGCCGaCCGGGa -3'
miRNA:   3'- -GGGCCGCgGCU------------CGCGUGGCgGGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.