miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 194974 0.67 0.478802
Target:  5'- gCCGGCucguacaggcacagcGCCGcGCGCA-CGCCCugccGGGCg -3'
miRNA:   3'- gGGCCG---------------CGGCuCGCGUgGCGGG----CCUG- -5'
11088 3' -66.2 NC_002794.1 + 194841 0.68 0.417332
Target:  5'- gCCCGGCGUCuccAGcCGCACCGUCUGcccGCg -3'
miRNA:   3'- -GGGCCGCGGc--UC-GCGUGGCGGGCc--UG- -5'
11088 3' -66.2 NC_002794.1 + 194518 0.67 0.465971
Target:  5'- gCCCGcGUGCCGccggcccAGCaGCGCCGCCagcacgcccgcgCGGAa -3'
miRNA:   3'- -GGGC-CGCGGC-------UCG-CGUGGCGG------------GCCUg -5'
11088 3' -66.2 NC_002794.1 + 194372 0.74 0.18202
Target:  5'- uCCCGcGUGCCcAGCcacaccagcuGCGCCGCCCGGuCg -3'
miRNA:   3'- -GGGC-CGCGGcUCG----------CGUGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 194305 0.68 0.449979
Target:  5'- gUCCaGCGCC-AGCGCcuGCCGCagCGGAUc -3'
miRNA:   3'- -GGGcCGCGGcUCGCG--UGGCGg-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 194057 0.67 0.501441
Target:  5'- gCCGcCGCCGAGaGCGCCGCCUu--- -3'
miRNA:   3'- gGGCcGCGGCUCgCGUGGCGGGccug -5'
11088 3' -66.2 NC_002794.1 + 194030 0.66 0.573682
Target:  5'- gCCGGCGCCucGCcCGCCGCCg---- -3'
miRNA:   3'- gGGCCGCGGcuCGcGUGGCGGgccug -5'
11088 3' -66.2 NC_002794.1 + 193818 0.74 0.199377
Target:  5'- gUCUGGCGCCGAcGCGuCGCgGCgCCGGcACu -3'
miRNA:   3'- -GGGCCGCGGCU-CGC-GUGgCG-GGCC-UG- -5'
11088 3' -66.2 NC_002794.1 + 193718 0.69 0.378625
Target:  5'- gCCCGcccCGCCG-GUGUccucGCCGCCCGcGGCu -3'
miRNA:   3'- -GGGCc--GCGGCuCGCG----UGGCGGGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 192369 0.68 0.428596
Target:  5'- gCCGcCGaCCGAGCGCgggcugaccgccaccGCCGCgCCGGGg -3'
miRNA:   3'- gGGCcGC-GGCUCGCG---------------UGGCG-GGCCUg -5'
11088 3' -66.2 NC_002794.1 + 191669 0.67 0.483983
Target:  5'- -aCGGCGCCGgcagcggcggcGGCGUGCCcucGUCgCGGACc -3'
miRNA:   3'- ggGCCGCGGC-----------UCGCGUGG---CGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 191517 0.69 0.378625
Target:  5'- gCCaGCGCCGGGCGU-CgGCCCGcGCc -3'
miRNA:   3'- gGGcCGCGGCUCGCGuGgCGGGCcUG- -5'
11088 3' -66.2 NC_002794.1 + 191023 0.67 0.491804
Target:  5'- aUCGGCacguucaGCCGGaCGCACCaguuGCCCGGGg -3'
miRNA:   3'- gGGCCG-------CGGCUcGCGUGG----CGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 190928 0.67 0.483983
Target:  5'- cCCCGGCccgcaGCCGGuaGCACgGCCCcaGCa -3'
miRNA:   3'- -GGGCCG-----CGGCUcgCGUGgCGGGccUG- -5'
11088 3' -66.2 NC_002794.1 + 190471 0.68 0.441685
Target:  5'- gCCCGaCGCCcacGGGUGCcccacGCCGCCCaGGAg -3'
miRNA:   3'- -GGGCcGCGG---CUCGCG-----UGGCGGG-CCUg -5'
11088 3' -66.2 NC_002794.1 + 190204 0.75 0.147789
Target:  5'- cUCCaGCGCCGcGCGCACC-CgCCGGGCg -3'
miRNA:   3'- -GGGcCGCGGCuCGCGUGGcG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 190132 0.7 0.342401
Target:  5'- gUCCGcGCGCCGAuaccacGCGUACUGCUgGcGGCg -3'
miRNA:   3'- -GGGC-CGCGGCU------CGCGUGGCGGgC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 189898 0.7 0.308099
Target:  5'- gCCCGccgucaGCGCCGccGCGCgACCGCCCGcucgcccGACg -3'
miRNA:   3'- -GGGC------CGCGGCu-CGCG-UGGCGGGC-------CUG- -5'
11088 3' -66.2 NC_002794.1 + 189659 0.74 0.190525
Target:  5'- gCCGGCugGCCGAGCGguCGCCccgGCCgGGACu -3'
miRNA:   3'- gGGCCG--CGGCUCGC--GUGG---CGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 189589 0.72 0.260256
Target:  5'- gCCGGCGCCccuuAGCcCGuCCGCCCGaGACc -3'
miRNA:   3'- gGGCCGCGGc---UCGcGU-GGCGGGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.