miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 189481 0.67 0.483983
Target:  5'- gCgGGCGUCGuGUGCACCcagCUGGGCa -3'
miRNA:   3'- gGgCCGCGGCuCGCGUGGcg-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 188796 0.7 0.342401
Target:  5'- gCCGGCcccGCCGAGC--GCCGUCCaGGCg -3'
miRNA:   3'- gGGCCG---CGGCUCGcgUGGCGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 188371 0.66 0.528128
Target:  5'- -gCGGCgGCCGAGgGCGuuCU-CCCGGGCu -3'
miRNA:   3'- ggGCCG-CGGCUCgCGU--GGcGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 188345 0.75 0.162214
Target:  5'- -gCGGCGCCGucGCGC-CCGUCCGGcCg -3'
miRNA:   3'- ggGCCGCGGCu-CGCGuGGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 188268 0.68 0.417332
Target:  5'- -gCGGCggGCCGGGUagcggaugcaggGCGCCGCgcgCCGGACc -3'
miRNA:   3'- ggGCCG--CGGCUCG------------CGUGGCG---GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 188025 0.7 0.335463
Target:  5'- uCUCGGCGCCcu---CGCCGuCCCGGACg -3'
miRNA:   3'- -GGGCCGCGGcucgcGUGGC-GGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 187901 0.67 0.510274
Target:  5'- gCgCGGUGCCGcuCGC-CCGC-CGGGCc -3'
miRNA:   3'- -GgGCCGCGGCucGCGuGGCGgGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 187839 0.67 0.492676
Target:  5'- gCUCGGCgcGCCGAGgGCucugcccaGCCGCgCGcGGCu -3'
miRNA:   3'- -GGGCCG--CGGCUCgCG--------UGGCGgGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 187767 0.71 0.289794
Target:  5'- gCCGGCGCCGGuCGCcUCGacCCCGGAg -3'
miRNA:   3'- gGGCCGCGGCUcGCGuGGC--GGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 187571 0.67 0.510274
Target:  5'- gCCCGuaccCGCCGucGGCGCgGCCGCCguCGcGACg -3'
miRNA:   3'- -GGGCc---GCGGC--UCGCG-UGGCGG--GC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 187462 0.71 0.302325
Target:  5'- gCUCGGCGUCGcucggcGCGCGCCggGCCgaGGACg -3'
miRNA:   3'- -GGGCCGCGGCu-----CGCGUGG--CGGg-CCUG- -5'
11088 3' -66.2 NC_002794.1 + 186306 0.68 0.441685
Target:  5'- gCCGGuCGCCGcGGCGCGCuCGUCCu--- -3'
miRNA:   3'- gGGCC-GCGGC-UCGCGUG-GCGGGccug -5'
11088 3' -66.2 NC_002794.1 + 186277 0.66 0.528128
Target:  5'- gCCUGGCGC--GGCgGCACCGCggCCaGGCg -3'
miRNA:   3'- -GGGCCGCGgcUCG-CGUGGCG--GGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 186084 0.67 0.504966
Target:  5'- gCCGccuuCGCCGGGCGCuucgucgccgucgccGCCGCCgGGuCc -3'
miRNA:   3'- gGGCc---GCGGCUCGCG---------------UGGCGGgCCuG- -5'
11088 3' -66.2 NC_002794.1 + 185996 0.69 0.378625
Target:  5'- cUCCucCGCCGGGCucCGCCGCuCCGGGCc -3'
miRNA:   3'- -GGGccGCGGCUCGc-GUGGCG-GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 185791 0.69 0.378625
Target:  5'- gCCGGCGCgGGGacccaCAUCGCCgGGAUc -3'
miRNA:   3'- gGGCCGCGgCUCgc---GUGGCGGgCCUG- -5'
11088 3' -66.2 NC_002794.1 + 185756 0.66 0.519171
Target:  5'- gUCCaGcCGCCG-GCGCgGCCGCCCGucACa -3'
miRNA:   3'- -GGGcC-GCGGCuCGCG-UGGCGGGCc-UG- -5'
11088 3' -66.2 NC_002794.1 + 185550 0.66 0.546209
Target:  5'- aCCCG--GCCGcGCGCcCCGCCCugccgcggcaGGGCg -3'
miRNA:   3'- -GGGCcgCGGCuCGCGuGGCGGG----------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 185335 0.72 0.254652
Target:  5'- aCCC-GCGUCGAccgcucGCGCGCCGCCgcgagCGGGCc -3'
miRNA:   3'- -GGGcCGCGGCU------CGCGUGGCGG-----GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 185271 0.7 0.31527
Target:  5'- gCCGcCgGCCGAGUGgGCCGCC-GGACa -3'
miRNA:   3'- gGGCcG-CGGCUCGCgUGGCGGgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.