miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 3' -66.2 NC_002794.1 + 184931 0.68 0.409399
Target:  5'- gCCGGCggucguccuGCCGcAGCuGCGCCGgCCCGcGCa -3'
miRNA:   3'- gGGCCG---------CGGC-UCG-CGUGGC-GGGCcUG- -5'
11088 3' -66.2 NC_002794.1 + 184830 0.73 0.222588
Target:  5'- ---cGCGuCCGGGCGCACCGCgcagcgauacgugCCGGACg -3'
miRNA:   3'- gggcCGC-GGCUCGCGUGGCG-------------GGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 184518 0.75 0.16872
Target:  5'- cCCCGcGCGCggcgCGGGCGaCGCCGCCCaccgccgccucuucGGACg -3'
miRNA:   3'- -GGGC-CGCG----GCUCGC-GUGGCGGG--------------CCUG- -5'
11088 3' -66.2 NC_002794.1 + 184464 0.74 0.185805
Target:  5'- gCCCGcGgGCCGcgcgaacGGCGCGCggggccccggaCGCCCGGGCg -3'
miRNA:   3'- -GGGC-CgCGGC-------UCGCGUG-----------GCGGGCCUG- -5'
11088 3' -66.2 NC_002794.1 + 184160 0.66 0.563566
Target:  5'- gCCGGCGacggcgucuccacCCGAcacCGCGgCGCCCGG-Cg -3'
miRNA:   3'- gGGCCGC-------------GGCUc--GCGUgGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 184029 0.66 0.519171
Target:  5'- gCCaCGGCaCCGcgcgcAGCGCGCgGUCgCGGGCc -3'
miRNA:   3'- -GG-GCCGcGGC-----UCGCGUGgCGG-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 183672 0.72 0.23322
Target:  5'- gCCCGaGCGCCGAcgggucgaGCGCccGCCGCgCGcGGCg -3'
miRNA:   3'- -GGGC-CGCGGCU--------CGCG--UGGCGgGC-CUG- -5'
11088 3' -66.2 NC_002794.1 + 183621 0.67 0.510274
Target:  5'- gCCGGCGCCcc-CGCGCC-CCC-GACu -3'
miRNA:   3'- gGGCCGCGGcucGCGUGGcGGGcCUG- -5'
11088 3' -66.2 NC_002794.1 + 183558 0.71 0.289794
Target:  5'- aCUGcGCGCCGAGC-CGCCGacaCGGGCc -3'
miRNA:   3'- gGGC-CGCGGCUCGcGUGGCgg-GCCUG- -5'
11088 3' -66.2 NC_002794.1 + 183511 0.69 0.356585
Target:  5'- cCCCGagacccaugucGCgGCCGuGCGCGCCccguccGCCCGGGg -3'
miRNA:   3'- -GGGC-----------CG-CGGCuCGCGUGG------CGGGCCUg -5'
11088 3' -66.2 NC_002794.1 + 183444 0.71 0.302325
Target:  5'- aCCGGCGCCcgccaccgccGGCGC-CCGCCCGccGCg -3'
miRNA:   3'- gGGCCGCGGc---------UCGCGuGGCGGGCc-UG- -5'
11088 3' -66.2 NC_002794.1 + 183375 0.66 0.5453
Target:  5'- uCCCGGCcgugccccgucccGCCGAGCuGCAgCaacaGCCaCGGGa -3'
miRNA:   3'- -GGGCCG-------------CGGCUCG-CGU-Gg---CGG-GCCUg -5'
11088 3' -66.2 NC_002794.1 + 183182 0.7 0.335463
Target:  5'- gUCGGgGaCCGAGaCGCGCCGCCaCGccGGCg -3'
miRNA:   3'- gGGCCgC-GGCUC-GCGUGGCGG-GC--CUG- -5'
11088 3' -66.2 NC_002794.1 + 182994 0.77 0.110743
Target:  5'- gCCGGCGCuucgccgCGGGCGCcccgcgcgcgcccGCCGCCCcGGACg -3'
miRNA:   3'- gGGCCGCG-------GCUCGCG-------------UGGCGGG-CCUG- -5'
11088 3' -66.2 NC_002794.1 + 182942 0.68 0.425359
Target:  5'- gUCCGGCGCCGGGCucgaGCCGacggcggCCGG-Cu -3'
miRNA:   3'- -GGGCCGCGGCUCGcg--UGGCg------GGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 182778 0.66 0.573682
Target:  5'- gCCCGGUccaccaccuGCC-AGCGCACgGUCgCGGuCg -3'
miRNA:   3'- -GGGCCG---------CGGcUCGCGUGgCGG-GCCuG- -5'
11088 3' -66.2 NC_002794.1 + 182358 0.69 0.40156
Target:  5'- gCgGGUGaCCGGGCGCACgGCCCcccGGuCc -3'
miRNA:   3'- gGgCCGC-GGCUCGCGUGgCGGG---CCuG- -5'
11088 3' -66.2 NC_002794.1 + 182198 0.71 0.302325
Target:  5'- cCUCGGCGCCG-GCGUcgCGCCaCGGGg -3'
miRNA:   3'- -GGGCCGCGGCuCGCGugGCGG-GCCUg -5'
11088 3' -66.2 NC_002794.1 + 182056 0.67 0.483983
Target:  5'- uCCUGcGCGuaGGGCGcCugCGUCCGGuCg -3'
miRNA:   3'- -GGGC-CGCggCUCGC-GugGCGGGCCuG- -5'
11088 3' -66.2 NC_002794.1 + 182022 0.71 0.289794
Target:  5'- cCCCGGCGuCCGGGC-CGCCGgcgaCCaGACc -3'
miRNA:   3'- -GGGCCGC-GGCUCGcGUGGCg---GGcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.