miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 5' -57 NC_002794.1 + 90993 0.66 0.923443
Target:  5'- cCGGgCCGAggCGGaGCg---GGCCGACAc -3'
miRNA:   3'- -GCUgGGCUa-GCC-CGagaaCCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 145528 0.66 0.923443
Target:  5'- cCGGCCCGAgcgccUCGGGCgcccCgagcGGcCCGACc -3'
miRNA:   3'- -GCUGGGCU-----AGCCCGa---Gaa--CC-GGUUGu -5'
11088 5' -57 NC_002794.1 + 22616 0.66 0.923443
Target:  5'- uCGAgCCGAUCGGGCcgcUCgaGGCg---- -3'
miRNA:   3'- -GCUgGGCUAGCCCG---AGaaCCGguugu -5'
11088 5' -57 NC_002794.1 + 35989 0.66 0.917994
Target:  5'- gGACCCGGUUuuauugucgcgGGGCUC--GGgCGGCGg -3'
miRNA:   3'- gCUGGGCUAG-----------CCCGAGaaCCgGUUGU- -5'
11088 5' -57 NC_002794.1 + 49149 0.66 0.917994
Target:  5'- uCGACCCGAaaccagCGGGCcgUCcgggaGGCCGAg- -3'
miRNA:   3'- -GCUGGGCUa-----GCCCG--AGaa---CCGGUUgu -5'
11088 5' -57 NC_002794.1 + 111101 0.66 0.917994
Target:  5'- gGGCCCGG-CGGGaccgUGGCCGucgACGg -3'
miRNA:   3'- gCUGGGCUaGCCCgagaACCGGU---UGU- -5'
11088 5' -57 NC_002794.1 + 63986 0.66 0.912896
Target:  5'- uGACCCGcaaagCGGGCUCcgucuggguccugcGGCUGGCGa -3'
miRNA:   3'- gCUGGGCua---GCCCGAGaa------------CCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 126463 0.66 0.912318
Target:  5'- cCGGCUCG-UCGGGaC-CUUGGCCu--- -3'
miRNA:   3'- -GCUGGGCuAGCCC-GaGAACCGGuugu -5'
11088 5' -57 NC_002794.1 + 181363 0.66 0.912318
Target:  5'- cCGGCCCGGUUGaGGgUCacgGGcCCGGCc -3'
miRNA:   3'- -GCUGGGCUAGC-CCgAGaa-CC-GGUUGu -5'
11088 5' -57 NC_002794.1 + 67050 0.66 0.900294
Target:  5'- gGACCCGGcguccgUGGGCUCcucgcUGGCCu--- -3'
miRNA:   3'- gCUGGGCUa-----GCCCGAGa----ACCGGuugu -5'
11088 5' -57 NC_002794.1 + 87034 0.66 0.900294
Target:  5'- gGAUCCGGggaccggCGcGGCUCggGGCCGGg- -3'
miRNA:   3'- gCUGGGCUa------GC-CCGAGaaCCGGUUgu -5'
11088 5' -57 NC_002794.1 + 44247 0.67 0.893949
Target:  5'- gCGGCUCGGUgcCGGGCggCUcGGCCGcCGg -3'
miRNA:   3'- -GCUGGGCUA--GCCCGa-GAaCCGGUuGU- -5'
11088 5' -57 NC_002794.1 + 35 0.67 0.893949
Target:  5'- aGGCCgccgCGGGCUCUcggacgaacGGCCGACGc -3'
miRNA:   3'- gCUGGgcuaGCCCGAGAa--------CCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 45609 0.67 0.892003
Target:  5'- gGACCCGGaacUCGGGCUuCUcguacccgaaacagUGGUCGGa- -3'
miRNA:   3'- gCUGGGCU---AGCCCGA-GA--------------ACCGGUUgu -5'
11088 5' -57 NC_002794.1 + 140283 0.67 0.887387
Target:  5'- uGACCgCGuuuUUGGGcCUCUcGGCCAAg- -3'
miRNA:   3'- gCUGG-GCu--AGCCC-GAGAaCCGGUUgu -5'
11088 5' -57 NC_002794.1 + 143406 0.67 0.880611
Target:  5'- uCGACCgGcgCGGGCcgggcgaaggUCcggaaGGCCAGCAu -3'
miRNA:   3'- -GCUGGgCuaGCCCG----------AGaa---CCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 122990 0.67 0.873625
Target:  5'- -cGCCUGGUgCGGGCcgugCUgacgGGCCGGCu -3'
miRNA:   3'- gcUGGGCUA-GCCCGa---GAa---CCGGUUGu -5'
11088 5' -57 NC_002794.1 + 70218 0.67 0.866433
Target:  5'- -cGCCCGGacggUCGGGCgggcGGCCGGCc -3'
miRNA:   3'- gcUGGGCU----AGCCCGagaaCCGGUUGu -5'
11088 5' -57 NC_002794.1 + 67577 0.67 0.866433
Target:  5'- cCGA-CCGGUCGGcGgaCUUGGUCAugAu -3'
miRNA:   3'- -GCUgGGCUAGCC-CgaGAACCGGUugU- -5'
11088 5' -57 NC_002794.1 + 60174 0.67 0.859041
Target:  5'- -aGCCCGcgCGGGCgCUcGGCCuGCc -3'
miRNA:   3'- gcUGGGCuaGCCCGaGAaCCGGuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.