Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11088 | 5' | -57 | NC_002794.1 | + | 112160 | 0.76 | 0.413153 |
Target: 5'- aGAcCCCGA-CGaGGCUCUgcgcGGCCAGCAg -3' miRNA: 3'- gCU-GGGCUaGC-CCGAGAa---CCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 115840 | 0.74 | 0.521938 |
Target: 5'- gGGCCCGG-CGGGCUCg-GGCCuggGACGc -3' miRNA: 3'- gCUGGGCUaGCCCGAGaaCCGG---UUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 43730 | 0.72 | 0.620138 |
Target: 5'- -cACCCGAUCGGcCuUCUUGGCCAc-- -3' miRNA: 3'- gcUGGGCUAGCCcG-AGAACCGGUugu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 135447 | 0.72 | 0.610171 |
Target: 5'- -aACCCGA-CGGGCUCccggGGCCcGCGg -3' miRNA: 3'- gcUGGGCUaGCCCGAGaa--CCGGuUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 70629 | 0.71 | 0.679861 |
Target: 5'- cCGcCCCGGUCGcaccgccaccaGGUUCUUGGCCucguGCGc -3' miRNA: 3'- -GCuGGGCUAGC-----------CCGAGAACCGGu---UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 14986 | 0.71 | 0.660019 |
Target: 5'- gCGACCCGGcagcagcuccUCGGGCggUCUcGGCUGGCu -3' miRNA: 3'- -GCUGGGCU----------AGCCCG--AGAaCCGGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 68858 | 0.71 | 0.699555 |
Target: 5'- aCGAcCCCGGagcUCGGGCUCgccGGCCu--- -3' miRNA: 3'- -GCU-GGGCU---AGCCCGAGaa-CCGGuugu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 121195 | 0.7 | 0.719033 |
Target: 5'- aCGAUCCGAUCGGGgUCgacuucggGGgCGGCc -3' miRNA: 3'- -GCUGGGCUAGCCCgAGaa------CCgGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 92330 | 0.7 | 0.709325 |
Target: 5'- gGGCCCGggCGGGCggCUcGGCguCAACGu -3' miRNA: 3'- gCUGGGCuaGCCCGa-GAaCCG--GUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 157656 | 0.69 | 0.78453 |
Target: 5'- aCGAuCCCGAcgcgcuggcggcUUGGGCcgCUUGGCguGCAc -3' miRNA: 3'- -GCU-GGGCU------------AGCCCGa-GAACCGguUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 92416 | 0.69 | 0.793434 |
Target: 5'- uCGACCCGAgcaCGGGCgaggacacgCU-GGCCGuGCGg -3' miRNA: 3'- -GCUGGGCUa--GCCCGa--------GAaCCGGU-UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 73642 | 0.69 | 0.78453 |
Target: 5'- aCGACCUGu---GGCUggUGGCCGACAc -3' miRNA: 3'- -GCUGGGCuagcCCGAgaACCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 35644 | 0.69 | 0.793434 |
Target: 5'- aGACCCGGgaCGGGCgcccggUCUccgacgUGGUCAACGa -3' miRNA: 3'- gCUGGGCUa-GCCCG------AGA------ACCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 125662 | 0.69 | 0.78453 |
Target: 5'- uCGGCgcgCUGAaCGGGCUC-UGGCUGACGg -3' miRNA: 3'- -GCUG---GGCUaGCCCGAGaACCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 109269 | 0.69 | 0.766341 |
Target: 5'- uGACCaCGGUCuuGGaGCUCUccgccgacgcgcUGGCCAACc -3' miRNA: 3'- gCUGG-GCUAG--CC-CGAGA------------ACCGGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 118093 | 0.68 | 0.827586 |
Target: 5'- aCGGCCUGGaacUCGGGCag--GGCCAcgGCGu -3' miRNA: 3'- -GCUGGGCU---AGCCCGagaaCCGGU--UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 19370 | 0.68 | 0.827586 |
Target: 5'- -cGCCCgGAUCGGGCg---GGCCGGuCAc -3' miRNA: 3'- gcUGGG-CUAGCCCGagaaCCGGUU-GU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 189885 | 0.68 | 0.819282 |
Target: 5'- cCGGCCCGcUCGGGCcCgccGUCAGCGc -3' miRNA: 3'- -GCUGGGCuAGCCCGaGaacCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 70057 | 0.68 | 0.83572 |
Target: 5'- -cGCCCGGUCGGGC----GGCC-GCAg -3' miRNA: 3'- gcUGGGCUAGCCCGagaaCCGGuUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 104498 | 0.68 | 0.843678 |
Target: 5'- gCGGCCgGGUCGGGCgagaacgGGCUgaGGCGc -3' miRNA: 3'- -GCUGGgCUAGCCCGagaa---CCGG--UUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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