miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 5' -57 NC_002794.1 + 112160 0.76 0.413153
Target:  5'- aGAcCCCGA-CGaGGCUCUgcgcGGCCAGCAg -3'
miRNA:   3'- gCU-GGGCUaGC-CCGAGAa---CCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 115840 0.74 0.521938
Target:  5'- gGGCCCGG-CGGGCUCg-GGCCuggGACGc -3'
miRNA:   3'- gCUGGGCUaGCCCGAGaaCCGG---UUGU- -5'
11088 5' -57 NC_002794.1 + 135447 0.72 0.610171
Target:  5'- -aACCCGA-CGGGCUCccggGGCCcGCGg -3'
miRNA:   3'- gcUGGGCUaGCCCGAGaa--CCGGuUGU- -5'
11088 5' -57 NC_002794.1 + 43730 0.72 0.620138
Target:  5'- -cACCCGAUCGGcCuUCUUGGCCAc-- -3'
miRNA:   3'- gcUGGGCUAGCCcG-AGAACCGGUugu -5'
11088 5' -57 NC_002794.1 + 14986 0.71 0.660019
Target:  5'- gCGACCCGGcagcagcuccUCGGGCggUCUcGGCUGGCu -3'
miRNA:   3'- -GCUGGGCU----------AGCCCG--AGAaCCGGUUGu -5'
11088 5' -57 NC_002794.1 + 70629 0.71 0.679861
Target:  5'- cCGcCCCGGUCGcaccgccaccaGGUUCUUGGCCucguGCGc -3'
miRNA:   3'- -GCuGGGCUAGC-----------CCGAGAACCGGu---UGU- -5'
11088 5' -57 NC_002794.1 + 68858 0.71 0.699555
Target:  5'- aCGAcCCCGGagcUCGGGCUCgccGGCCu--- -3'
miRNA:   3'- -GCU-GGGCU---AGCCCGAGaa-CCGGuugu -5'
11088 5' -57 NC_002794.1 + 92330 0.7 0.709325
Target:  5'- gGGCCCGggCGGGCggCUcGGCguCAACGu -3'
miRNA:   3'- gCUGGGCuaGCCCGa-GAaCCG--GUUGU- -5'
11088 5' -57 NC_002794.1 + 121195 0.7 0.719033
Target:  5'- aCGAUCCGAUCGGGgUCgacuucggGGgCGGCc -3'
miRNA:   3'- -GCUGGGCUAGCCCgAGaa------CCgGUUGu -5'
11088 5' -57 NC_002794.1 + 109269 0.69 0.766341
Target:  5'- uGACCaCGGUCuuGGaGCUCUccgccgacgcgcUGGCCAACc -3'
miRNA:   3'- gCUGG-GCUAG--CC-CGAGA------------ACCGGUUGu -5'
11088 5' -57 NC_002794.1 + 125662 0.69 0.78453
Target:  5'- uCGGCgcgCUGAaCGGGCUC-UGGCUGACGg -3'
miRNA:   3'- -GCUG---GGCUaGCCCGAGaACCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 73642 0.69 0.78453
Target:  5'- aCGACCUGu---GGCUggUGGCCGACAc -3'
miRNA:   3'- -GCUGGGCuagcCCGAgaACCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 157656 0.69 0.78453
Target:  5'- aCGAuCCCGAcgcgcuggcggcUUGGGCcgCUUGGCguGCAc -3'
miRNA:   3'- -GCU-GGGCU------------AGCCCGa-GAACCGguUGU- -5'
11088 5' -57 NC_002794.1 + 92416 0.69 0.793434
Target:  5'- uCGACCCGAgcaCGGGCgaggacacgCU-GGCCGuGCGg -3'
miRNA:   3'- -GCUGGGCUa--GCCCGa--------GAaCCGGU-UGU- -5'
11088 5' -57 NC_002794.1 + 35644 0.69 0.793434
Target:  5'- aGACCCGGgaCGGGCgcccggUCUccgacgUGGUCAACGa -3'
miRNA:   3'- gCUGGGCUa-GCCCG------AGA------ACCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 189885 0.68 0.819282
Target:  5'- cCGGCCCGcUCGGGCcCgccGUCAGCGc -3'
miRNA:   3'- -GCUGGGCuAGCCCGaGaacCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 118093 0.68 0.827586
Target:  5'- aCGGCCUGGaacUCGGGCag--GGCCAcgGCGu -3'
miRNA:   3'- -GCUGGGCU---AGCCCGagaaCCGGU--UGU- -5'
11088 5' -57 NC_002794.1 + 19370 0.68 0.827586
Target:  5'- -cGCCCgGAUCGGGCg---GGCCGGuCAc -3'
miRNA:   3'- gcUGGG-CUAGCCCGagaaCCGGUU-GU- -5'
11088 5' -57 NC_002794.1 + 70057 0.68 0.83572
Target:  5'- -cGCCCGGUCGGGC----GGCC-GCAg -3'
miRNA:   3'- gcUGGGCUAGCCCGagaaCCGGuUGU- -5'
11088 5' -57 NC_002794.1 + 104498 0.68 0.843678
Target:  5'- gCGGCCgGGUCGGGCgagaacgGGCUgaGGCGc -3'
miRNA:   3'- -GCUGGgCUAGCCCGagaa---CCGG--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.