Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11088 | 5' | -57 | NC_002794.1 | + | 90993 | 0.66 | 0.923443 |
Target: 5'- cCGGgCCGAggCGGaGCg---GGCCGACAc -3' miRNA: 3'- -GCUgGGCUa-GCC-CGagaaCCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 91957 | 0.67 | 0.859041 |
Target: 5'- cCGACCUGGUCuGGuaUCUcaaccgccUGGCCAucuACAa -3' miRNA: 3'- -GCUGGGCUAG-CCcgAGA--------ACCGGU---UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 92330 | 0.7 | 0.709325 |
Target: 5'- gGGCCCGggCGGGCggCUcGGCguCAACGu -3' miRNA: 3'- gCUGGGCuaGCCCGa-GAaCCG--GUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 92416 | 0.69 | 0.793434 |
Target: 5'- uCGACCCGAgcaCGGGCgaggacacgCU-GGCCGuGCGg -3' miRNA: 3'- -GCUGGGCUa--GCCCGa--------GAaCCGGU-UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 104498 | 0.68 | 0.843678 |
Target: 5'- gCGGCCgGGUCGGGCgagaacgGGCUgaGGCGc -3' miRNA: 3'- -GCUGGgCUAGCCCGagaa---CCGG--UUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 109269 | 0.69 | 0.766341 |
Target: 5'- uGACCaCGGUCuuGGaGCUCUccgccgacgcgcUGGCCAACc -3' miRNA: 3'- gCUGG-GCUAG--CC-CGAGA------------ACCGGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 111101 | 0.66 | 0.917994 |
Target: 5'- gGGCCCGG-CGGGaccgUGGCCGucgACGg -3' miRNA: 3'- gCUGGGCUaGCCCgagaACCGGU---UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 112160 | 0.76 | 0.413153 |
Target: 5'- aGAcCCCGA-CGaGGCUCUgcgcGGCCAGCAg -3' miRNA: 3'- gCU-GGGCUaGC-CCGAGAa---CCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 115840 | 0.74 | 0.521938 |
Target: 5'- gGGCCCGG-CGGGCUCg-GGCCuggGACGc -3' miRNA: 3'- gCUGGGCUaGCCCGAGaaCCGG---UUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 118093 | 0.68 | 0.827586 |
Target: 5'- aCGGCCUGGaacUCGGGCag--GGCCAcgGCGu -3' miRNA: 3'- -GCUGGGCU---AGCCCGagaaCCGGU--UGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 121195 | 0.7 | 0.719033 |
Target: 5'- aCGAUCCGAUCGGGgUCgacuucggGGgCGGCc -3' miRNA: 3'- -GCUGGGCUAGCCCgAGaa------CCgGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 122990 | 0.67 | 0.873625 |
Target: 5'- -cGCCUGGUgCGGGCcgugCUgacgGGCCGGCu -3' miRNA: 3'- gcUGGGCUA-GCCCGa---GAa---CCGGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 125662 | 0.69 | 0.78453 |
Target: 5'- uCGGCgcgCUGAaCGGGCUC-UGGCUGACGg -3' miRNA: 3'- -GCUG---GGCUaGCCCGAGaACCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 126463 | 0.66 | 0.912318 |
Target: 5'- cCGGCUCG-UCGGGaC-CUUGGCCu--- -3' miRNA: 3'- -GCUGGGCuAGCCC-GaGAACCGGuugu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 135447 | 0.72 | 0.610171 |
Target: 5'- -aACCCGA-CGGGCUCccggGGCCcGCGg -3' miRNA: 3'- gcUGGGCUaGCCCGAGaa--CCGGuUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 140283 | 0.67 | 0.887387 |
Target: 5'- uGACCgCGuuuUUGGGcCUCUcGGCCAAg- -3' miRNA: 3'- gCUGG-GCu--AGCCC-GAGAaCCGGUUgu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 143406 | 0.67 | 0.880611 |
Target: 5'- uCGACCgGcgCGGGCcgggcgaaggUCcggaaGGCCAGCAu -3' miRNA: 3'- -GCUGGgCuaGCCCG----------AGaa---CCGGUUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 145528 | 0.66 | 0.923443 |
Target: 5'- cCGGCCCGAgcgccUCGGGCgcccCgagcGGcCCGACc -3' miRNA: 3'- -GCUGGGCU-----AGCCCGa---Gaa--CC-GGUUGu -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 157656 | 0.69 | 0.78453 |
Target: 5'- aCGAuCCCGAcgcgcuggcggcUUGGGCcgCUUGGCguGCAc -3' miRNA: 3'- -GCU-GGGCU------------AGCCCGa-GAACCGguUGU- -5' |
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11088 | 5' | -57 | NC_002794.1 | + | 181363 | 0.66 | 0.912318 |
Target: 5'- cCGGCCCGGUUGaGGgUCacgGGcCCGGCc -3' miRNA: 3'- -GCUGGGCUAGC-CCgAGaa-CC-GGUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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