miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11088 5' -57 NC_002794.1 + 90993 0.66 0.923443
Target:  5'- cCGGgCCGAggCGGaGCg---GGCCGACAc -3'
miRNA:   3'- -GCUgGGCUa-GCC-CGagaaCCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 87034 0.66 0.900294
Target:  5'- gGAUCCGGggaccggCGcGGCUCggGGCCGGg- -3'
miRNA:   3'- gCUGGGCUa------GC-CCGAGaaCCGGUUgu -5'
11088 5' -57 NC_002794.1 + 73642 0.69 0.78453
Target:  5'- aCGACCUGu---GGCUggUGGCCGACAc -3'
miRNA:   3'- -GCUGGGCuagcCCGAgaACCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 70629 0.71 0.679861
Target:  5'- cCGcCCCGGUCGcaccgccaccaGGUUCUUGGCCucguGCGc -3'
miRNA:   3'- -GCuGGGCUAGC-----------CCGAGAACCGGu---UGU- -5'
11088 5' -57 NC_002794.1 + 70218 0.67 0.866433
Target:  5'- -cGCCCGGacggUCGGGCgggcGGCCGGCc -3'
miRNA:   3'- gcUGGGCU----AGCCCGagaaCCGGUUGu -5'
11088 5' -57 NC_002794.1 + 70057 0.68 0.83572
Target:  5'- -cGCCCGGUCGGGC----GGCC-GCAg -3'
miRNA:   3'- gcUGGGCUAGCCCGagaaCCGGuUGU- -5'
11088 5' -57 NC_002794.1 + 68858 0.71 0.699555
Target:  5'- aCGAcCCCGGagcUCGGGCUCgccGGCCu--- -3'
miRNA:   3'- -GCU-GGGCU---AGCCCGAGaa-CCGGuugu -5'
11088 5' -57 NC_002794.1 + 67577 0.67 0.866433
Target:  5'- cCGA-CCGGUCGGcGgaCUUGGUCAugAu -3'
miRNA:   3'- -GCUgGGCUAGCC-CgaGAACCGGUugU- -5'
11088 5' -57 NC_002794.1 + 67050 0.66 0.900294
Target:  5'- gGACCCGGcguccgUGGGCUCcucgcUGGCCu--- -3'
miRNA:   3'- gCUGGGCUa-----GCCCGAGa----ACCGGuugu -5'
11088 5' -57 NC_002794.1 + 63986 0.66 0.912896
Target:  5'- uGACCCGcaaagCGGGCUCcgucuggguccugcGGCUGGCGa -3'
miRNA:   3'- gCUGGGCua---GCCCGAGaa------------CCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 60174 0.67 0.859041
Target:  5'- -aGCCCGcgCGGGCgCUcGGCCuGCc -3'
miRNA:   3'- gcUGGGCuaGCCCGaGAaCCGGuUGu -5'
11088 5' -57 NC_002794.1 + 49149 0.66 0.917994
Target:  5'- uCGACCCGAaaccagCGGGCcgUCcgggaGGCCGAg- -3'
miRNA:   3'- -GCUGGGCUa-----GCCCG--AGaa---CCGGUUgu -5'
11088 5' -57 NC_002794.1 + 45609 0.67 0.892003
Target:  5'- gGACCCGGaacUCGGGCUuCUcguacccgaaacagUGGUCGGa- -3'
miRNA:   3'- gCUGGGCU---AGCCCGA-GA--------------ACCGGUUgu -5'
11088 5' -57 NC_002794.1 + 44247 0.67 0.893949
Target:  5'- gCGGCUCGGUgcCGGGCggCUcGGCCGcCGg -3'
miRNA:   3'- -GCUGGGCUA--GCCCGa-GAaCCGGUuGU- -5'
11088 5' -57 NC_002794.1 + 43730 0.72 0.620138
Target:  5'- -cACCCGAUCGGcCuUCUUGGCCAc-- -3'
miRNA:   3'- gcUGGGCUAGCCcG-AGAACCGGUugu -5'
11088 5' -57 NC_002794.1 + 35989 0.66 0.917994
Target:  5'- gGACCCGGUUuuauugucgcgGGGCUC--GGgCGGCGg -3'
miRNA:   3'- gCUGGGCUAG-----------CCCGAGaaCCgGUUGU- -5'
11088 5' -57 NC_002794.1 + 35644 0.69 0.793434
Target:  5'- aGACCCGGgaCGGGCgcccggUCUccgacgUGGUCAACGa -3'
miRNA:   3'- gCUGGGCUa-GCCCG------AGA------ACCGGUUGU- -5'
11088 5' -57 NC_002794.1 + 22616 0.66 0.923443
Target:  5'- uCGAgCCGAUCGGGCcgcUCgaGGCg---- -3'
miRNA:   3'- -GCUgGGCUAGCCCG---AGaaCCGguugu -5'
11088 5' -57 NC_002794.1 + 19370 0.68 0.827586
Target:  5'- -cGCCCgGAUCGGGCg---GGCCGGuCAc -3'
miRNA:   3'- gcUGGG-CUAGCCCGagaaCCGGUU-GU- -5'
11088 5' -57 NC_002794.1 + 14986 0.71 0.660019
Target:  5'- gCGACCCGGcagcagcuccUCGGGCggUCUcGGCUGGCu -3'
miRNA:   3'- -GCUGGGCU----------AGCCCG--AGAaCCGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.