miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 79975 0.66 0.974121
Target:  5'- cCCCCGGCuCGgcgACGagGAGGCggaggaggacgaggaCGGCGa -3'
miRNA:   3'- -GGGGCUGuGCa--UGUagUUCCG---------------GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 41799 0.66 0.973074
Target:  5'- aCCCCGAagcagACGUcCAgCGAGGCgccCAGCa -3'
miRNA:   3'- -GGGGCUg----UGCAuGUaGUUCCG---GUCGc -5'
11089 3' -54.9 NC_002794.1 + 141619 0.66 0.973074
Target:  5'- -aCCGGCucGCGgucuagcgACGggAAGGCCGGCGu -3'
miRNA:   3'- ggGGCUG--UGCa-------UGUagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 188706 0.66 0.973074
Target:  5'- gCCCGugcGCACGcacaccGCGUaCAGGGCCAGa- -3'
miRNA:   3'- gGGGC---UGUGCa-----UGUA-GUUCCGGUCgc -5'
11089 3' -54.9 NC_002794.1 + 155458 0.66 0.973074
Target:  5'- gCCCGGCGCGUugAU--AGGCUuuauGGaCGa -3'
miRNA:   3'- gGGGCUGUGCAugUAguUCCGG----UC-GC- -5'
11089 3' -54.9 NC_002794.1 + 151580 0.66 0.972807
Target:  5'- cCCCCGGCgGCGcGCGcCGccgccgcGGGCCcGCGg -3'
miRNA:   3'- -GGGGCUG-UGCaUGUaGU-------UCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 53462 0.66 0.970321
Target:  5'- -gCCG-CACGcaaUGCGU-GAGGCCAGUGa -3'
miRNA:   3'- ggGGCuGUGC---AUGUAgUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 103766 0.66 0.970321
Target:  5'- uCCUCGAagaugGCGUGCAUCu---CCGGCGg -3'
miRNA:   3'- -GGGGCUg----UGCAUGUAGuuccGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53247 0.66 0.970321
Target:  5'- gCCCGcCGCGccgGCGUCGccgcgcgacaacGGGgCGGCGa -3'
miRNA:   3'- gGGGCuGUGCa--UGUAGU------------UCCgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 43107 0.66 0.970321
Target:  5'- uCCCCG-CGCu--CGUCcagGAGGCgGGCGa -3'
miRNA:   3'- -GGGGCuGUGcauGUAG---UUCCGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 126592 0.66 0.970321
Target:  5'- -aCCGGgACuGaGCGcCGAGGCCGGCGc -3'
miRNA:   3'- ggGGCUgUG-CaUGUaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 61949 0.66 0.967373
Target:  5'- gCCCCcAC-CGcccc-CGAGGCCAGCGg -3'
miRNA:   3'- -GGGGcUGuGCauguaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 11281 0.66 0.965508
Target:  5'- aCCUggUGGCGCGUccGCAacaccagccaggucuUCGuGGCCAGCGc -3'
miRNA:   3'- -GGG--GCUGUGCA--UGU---------------AGUuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 190701 0.66 0.964224
Target:  5'- cUCCCGGCGCa-GCGUCGGGuucuCCAGCc -3'
miRNA:   3'- -GGGGCUGUGcaUGUAGUUCc---GGUCGc -5'
11089 3' -54.9 NC_002794.1 + 49037 0.66 0.964224
Target:  5'- gUCCGGCGCGgucgucaGCGUcCAGGGCgcgCAGCa -3'
miRNA:   3'- gGGGCUGUGCa------UGUA-GUUCCG---GUCGc -5'
11089 3' -54.9 NC_002794.1 + 47931 0.66 0.964224
Target:  5'- aCCCCGACGCagaucggcgccGcGCGUCccGGcGCCGGCu -3'
miRNA:   3'- -GGGGCUGUG-----------CaUGUAGu-UC-CGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 26071 0.66 0.964224
Target:  5'- cCCCCGcGCACGccACG-CGGGG-CAGCGc -3'
miRNA:   3'- -GGGGC-UGUGCa-UGUaGUUCCgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 121791 0.66 0.964224
Target:  5'- cCCCCGGC-C--ACcgCGAccGGCCGGCGc -3'
miRNA:   3'- -GGGGCUGuGcaUGuaGUU--CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 99959 0.66 0.963897
Target:  5'- aCCgCCGACGgcgccagucUGUGCGUCAAcgucuucGGCCAGg- -3'
miRNA:   3'- -GG-GGCUGU---------GCAUGUAGUU-------CCGGUCgc -5'
11089 3' -54.9 NC_002794.1 + 14266 0.66 0.962235
Target:  5'- aCCCCGACcgaggUGUucggcuggagcgucaGCGUCGAGGCgCGGgGu -3'
miRNA:   3'- -GGGGCUGu----GCA---------------UGUAGUUCCG-GUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.