miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 151580 0.66 0.972807
Target:  5'- cCCCCGGCgGCGcGCGcCGccgccgcGGGCCcGCGg -3'
miRNA:   3'- -GGGGCUG-UGCaUGUaGU-------UCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 126592 0.66 0.970321
Target:  5'- -aCCGGgACuGaGCGcCGAGGCCGGCGc -3'
miRNA:   3'- ggGGCUgUG-CaUGUaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 43107 0.66 0.970321
Target:  5'- uCCCCG-CGCu--CGUCcagGAGGCgGGCGa -3'
miRNA:   3'- -GGGGCuGUGcauGUAG---UUCCGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53247 0.66 0.970321
Target:  5'- gCCCGcCGCGccgGCGUCGccgcgcgacaacGGGgCGGCGa -3'
miRNA:   3'- gGGGCuGUGCa--UGUAGU------------UCCgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 103766 0.66 0.970321
Target:  5'- uCCUCGAagaugGCGUGCAUCu---CCGGCGg -3'
miRNA:   3'- -GGGGCUg----UGCAUGUAGuuccGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53462 0.66 0.970321
Target:  5'- -gCCG-CACGcaaUGCGU-GAGGCCAGUGa -3'
miRNA:   3'- ggGGCuGUGC---AUGUAgUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 61949 0.66 0.967373
Target:  5'- gCCCCcAC-CGcccc-CGAGGCCAGCGg -3'
miRNA:   3'- -GGGGcUGuGCauguaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 131705 0.67 0.953515
Target:  5'- aCCCCGAC-CGgACccCGAGaGCgAGCGa -3'
miRNA:   3'- -GGGGCUGuGCaUGuaGUUC-CGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 65346 0.67 0.953515
Target:  5'- aCCCCaaaACGUACA--GGGcGCCGGCGc -3'
miRNA:   3'- -GGGGcugUGCAUGUagUUC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 182014 0.67 0.953515
Target:  5'- gCCCGGgACcccgGCGUCcGGGCCgccGGCGa -3'
miRNA:   3'- gGGGCUgUGca--UGUAGuUCCGG---UCGC- -5'
11089 3' -54.9 NC_002794.1 + 101819 0.67 0.953515
Target:  5'- --gCGGCGCGccgUGCG-CGAGGCCAuGCGg -3'
miRNA:   3'- gggGCUGUGC---AUGUaGUUCCGGU-CGC- -5'
11089 3' -54.9 NC_002794.1 + 110709 0.67 0.953515
Target:  5'- aCCagCGGCACGUAac-CGAGGUCGGgGg -3'
miRNA:   3'- -GGg-GCUGUGCAUguaGUUCCGGUCgC- -5'
11089 3' -54.9 NC_002794.1 + 186842 0.67 0.955055
Target:  5'- gCCCGACAgcgcgcgggcgcugcCGUGCAgcagCAgcGGGCuCGGCu -3'
miRNA:   3'- gGGGCUGU---------------GCAUGUa---GU--UCCG-GUCGc -5'
11089 3' -54.9 NC_002794.1 + 102012 0.67 0.956187
Target:  5'- aCCUCGGC-C-UACAUCGAGGCgcauuucgccgagcCGGCGu -3'
miRNA:   3'- -GGGGCUGuGcAUGUAGUUCCG--------------GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 100314 0.67 0.957299
Target:  5'- gCCgCUGGCACGcGCGgccggcgCAcGGCCGGCu -3'
miRNA:   3'- -GG-GGCUGUGCaUGUa------GUuCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 184902 0.67 0.956931
Target:  5'- gCCCGggcacucGCGCGggaACAUCGGcaGCCGGCGg -3'
miRNA:   3'- gGGGC-------UGUGCa--UGUAGUUc-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 147150 0.67 0.957299
Target:  5'- gCCCCGGgGCc-GCG--AGGGCCAGCu -3'
miRNA:   3'- -GGGGCUgUGcaUGUagUUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 45910 0.67 0.957299
Target:  5'- gCCgCCGGCACcggGCGaCGAGGCUcGCGc -3'
miRNA:   3'- -GG-GGCUGUGca-UGUaGUUCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 14184 0.67 0.957299
Target:  5'- cCUCCGAgACGUcaGCGUCccGGCCcGCu -3'
miRNA:   3'- -GGGGCUgUGCA--UGUAGuuCCGGuCGc -5'
11089 3' -54.9 NC_002794.1 + 55621 0.67 0.953515
Target:  5'- gCCCGuGCACGcugGCcagCAcgcGGGCCGGCa -3'
miRNA:   3'- gGGGC-UGUGCa--UGua-GU---UCCGGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.