miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 110709 0.67 0.953515
Target:  5'- aCCagCGGCACGUAac-CGAGGUCGGgGg -3'
miRNA:   3'- -GGg-GCUGUGCAUguaGUUCCGGUCgC- -5'
11089 3' -54.9 NC_002794.1 + 101819 0.67 0.953515
Target:  5'- --gCGGCGCGccgUGCG-CGAGGCCAuGCGg -3'
miRNA:   3'- gggGCUGUGC---AUGUaGUUCCGGU-CGC- -5'
11089 3' -54.9 NC_002794.1 + 182014 0.67 0.953515
Target:  5'- gCCCGGgACcccgGCGUCcGGGCCgccGGCGa -3'
miRNA:   3'- gGGGCUgUGca--UGUAGuUCCGG---UCGC- -5'
11089 3' -54.9 NC_002794.1 + 60083 0.68 0.920734
Target:  5'- gCCCGcGCAgGUGCucCAcGGCCAGCu -3'
miRNA:   3'- gGGGC-UGUgCAUGuaGUuCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 103264 0.68 0.915135
Target:  5'- gCCCUG-CACG-AUGUCcAGGaCCAGCGc -3'
miRNA:   3'- -GGGGCuGUGCaUGUAGuUCC-GGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 119370 0.68 0.915135
Target:  5'- uCCUCGuuCGCGUG-GUCGagcuGGGCCAGCa -3'
miRNA:   3'- -GGGGCu-GUGCAUgUAGU----UCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 143409 0.68 0.915135
Target:  5'- -aCCGGCGCGggccggGCgaagGUCcggAAGGCCAGCa -3'
miRNA:   3'- ggGGCUGUGCa-----UG----UAG---UUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 87044 0.68 0.915135
Target:  5'- -aCCGGCGCG-GC-UCGGGGCCGGg- -3'
miRNA:   3'- ggGGCUGUGCaUGuAGUUCCGGUCgc -5'
11089 3' -54.9 NC_002794.1 + 99251 0.68 0.915135
Target:  5'- aCCCCGcCGCGgagggGC-UCGGGGgcuCCGGCGc -3'
miRNA:   3'- -GGGGCuGUGCa----UGuAGUUCC---GGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 111103 0.68 0.909307
Target:  5'- gCCCGGCGggacCGUGgcCGUCGacGGcGCCGGCGg -3'
miRNA:   3'- gGGGCUGU----GCAU--GUAGU--UC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 186996 0.68 0.915135
Target:  5'- uCCgCCGGCuGCGU-CGUCAGGuaCGGCGu -3'
miRNA:   3'- -GG-GGCUG-UGCAuGUAGUUCcgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 137917 0.68 0.926103
Target:  5'- uCCCCGugGCGUucGCGgucgaugagcUgGAGGCagCGGCGg -3'
miRNA:   3'- -GGGGCugUGCA--UGU----------AgUUCCG--GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 123033 0.68 0.926103
Target:  5'- uCCCCGACaACGUcgGCGUguAcGGCCcGCu -3'
miRNA:   3'- -GGGGCUG-UGCA--UGUAguU-CCGGuCGc -5'
11089 3' -54.9 NC_002794.1 + 191301 0.68 0.926103
Target:  5'- aCCgaGACACGgaUGCga-GGGGCCGGCGu -3'
miRNA:   3'- -GGggCUGUGC--AUGuagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 194100 0.68 0.928187
Target:  5'- gCCCCGaACACGUGCugcggCAccgcgcgcacggcugAGG-CAGCGg -3'
miRNA:   3'- -GGGGC-UGUGCAUGua---GU---------------UCCgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 40458 0.68 0.929725
Target:  5'- gCCCCGggcgcugucccuucGgGCGgcuCAUCGAacGGCCGGCGc -3'
miRNA:   3'- -GGGGC--------------UgUGCau-GUAGUU--CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 22933 0.68 0.931243
Target:  5'- -aCCGGCACc--CAUCGgcuggccgacGGGCCGGCGc -3'
miRNA:   3'- ggGGCUGUGcauGUAGU----------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 58872 0.68 0.931243
Target:  5'- -aCCGGCAgcCGUGCGcgccgcgcagcUCGAGGCCcGCa -3'
miRNA:   3'- ggGGCUGU--GCAUGU-----------AGUUCCGGuCGc -5'
11089 3' -54.9 NC_002794.1 + 187408 0.68 0.931243
Target:  5'- gCCCCuGCAgGUucucgaGCGUCugcuggAAGGCCAGCc -3'
miRNA:   3'- -GGGGcUGUgCA------UGUAG------UUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 53107 0.68 0.914562
Target:  5'- aCCCCGGCgguuccggagcucGCGUcgaccgcgGCGcUCAgcccggcauAGGCCAGCGc -3'
miRNA:   3'- -GGGGCUG-------------UGCA--------UGU-AGU---------UCCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.