miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 840 0.83 0.220513
Target:  5'- uCCCCGGCGCGUGCGUUcGGcCCAGCGc -3'
miRNA:   3'- -GGGGCUGUGCAUGUAGuUCcGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 150643 0.78 0.431616
Target:  5'- aUCCCGGCACGcGCGUCGaccuGGGCUGGCc -3'
miRNA:   3'- -GGGGCUGUGCaUGUAGU----UCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 66944 0.75 0.563026
Target:  5'- cCCCCGAgGCcc---UCGAGGCCGGCGa -3'
miRNA:   3'- -GGGGCUgUGcauguAGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 40520 0.75 0.612847
Target:  5'- gCCgCCGACGCGccgacgggagACGagGGGGCCGGCGg -3'
miRNA:   3'- -GG-GGCUGUGCa---------UGUagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 96741 0.75 0.563026
Target:  5'- aCCgCCGGCGCGUcUcgCAAgcGGCCGGCGg -3'
miRNA:   3'- -GG-GGCUGUGCAuGuaGUU--CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 189395 0.74 0.62288
Target:  5'- gCUCGGcCACGUAgucCGcCAGGGCCAGCGg -3'
miRNA:   3'- gGGGCU-GUGCAU---GUaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 156184 0.73 0.726183
Target:  5'- uUCgGACGCGU-CAUCGgagucgccggucggaGGGCCGGCGa -3'
miRNA:   3'- gGGgCUGUGCAuGUAGU---------------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 55206 0.73 0.672997
Target:  5'- -aCCGGCGCG-GCG--GAGGCCGGCGg -3'
miRNA:   3'- ggGGCUGUGCaUGUagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 1221 0.72 0.759524
Target:  5'- gCCCCGGgGCGUGuucuauaaccCGUCuccgagccgcccgGAGGCCAGUGu -3'
miRNA:   3'- -GGGGCUgUGCAU----------GUAG-------------UUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 183855 0.72 0.769746
Target:  5'- uCUCCGuCGCGgcCGUCGGGGCCAccGCc -3'
miRNA:   3'- -GGGGCuGUGCauGUAGUUCCGGU--CGc -5'
11089 3' -54.9 NC_002794.1 + 110875 0.72 0.741566
Target:  5'- gUCCGGCACGUucucCAggugCcGGGCCAGCa -3'
miRNA:   3'- gGGGCUGUGCAu---GUa---GuUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 119667 0.71 0.796864
Target:  5'- aCCUCGACcuccgGCGUccccgGCGUCuccggcugcuGGGCCGGCGg -3'
miRNA:   3'- -GGGGCUG-----UGCA-----UGUAGu---------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 193001 0.71 0.814242
Target:  5'- gCCCGGCGUGUGCAgc---GCCAGCGg -3'
miRNA:   3'- gGGGCUGUGCAUGUaguucCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 186277 0.71 0.814242
Target:  5'- gCCUGGCGCGgcgGCAcCGcGGCCAGgCGg -3'
miRNA:   3'- gGGGCUGUGCa--UGUaGUuCCGGUC-GC- -5'
11089 3' -54.9 NC_002794.1 + 112162 0.71 0.814242
Target:  5'- aCCCCGACGag-GCucugCGcGGCCAGCa -3'
miRNA:   3'- -GGGGCUGUgcaUGua--GUuCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 16206 0.71 0.778915
Target:  5'- gCCUgGGCACG---GUCGAGGuCCGGCGg -3'
miRNA:   3'- -GGGgCUGUGCaugUAGUUCC-GGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 59189 0.71 0.778004
Target:  5'- aCCCCGuggcggucgacgcGCACGUcgGCGUCucGGCC-GCGg -3'
miRNA:   3'- -GGGGC-------------UGUGCA--UGUAGuuCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 188042 0.71 0.787957
Target:  5'- uCCCgGACGCG-GCGagucUCGAcuucGGCCAGCGu -3'
miRNA:   3'- -GGGgCUGUGCaUGU----AGUU----CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 48619 0.71 0.787957
Target:  5'- gCCUCaGACGCGgagcggcCGUCGGGGCCcGCGa -3'
miRNA:   3'- -GGGG-CUGUGCau-----GUAGUUCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 71800 0.71 0.778004
Target:  5'- cCCCCGGCGgGcGCggCGAGGCCGccucgucGCGa -3'
miRNA:   3'- -GGGGCUGUgCaUGuaGUUCCGGU-------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.