miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 186277 0.71 0.814242
Target:  5'- gCCUGGCGCGgcgGCAcCGcGGCCAGgCGg -3'
miRNA:   3'- gGGGCUGUGCa--UGUaGUuCCGGUC-GC- -5'
11089 3' -54.9 NC_002794.1 + 157659 0.7 0.854771
Target:  5'- aUCCCGACGCGcugGCGgcuuGGGCCgcuuGGCGu -3'
miRNA:   3'- -GGGGCUGUGCa--UGUagu-UCCGG----UCGC- -5'
11089 3' -54.9 NC_002794.1 + 23682 0.7 0.830982
Target:  5'- uCCCCGaACACGcGCcgcCGAGGCCccgaAGCGu -3'
miRNA:   3'- -GGGGC-UGUGCaUGua-GUUCCGG----UCGC- -5'
11089 3' -54.9 NC_002794.1 + 124250 0.7 0.839095
Target:  5'- uCCCCGcGCGCGgguaGUCGccGGCCAGCc -3'
miRNA:   3'- -GGGGC-UGUGCaug-UAGUu-CCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 66715 0.7 0.854771
Target:  5'- gCCCGGCACGgcCGccgcCAccGCCGGCGg -3'
miRNA:   3'- gGGGCUGUGCauGUa---GUucCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 21850 0.7 0.847027
Target:  5'- aCCCCGAUcgccccauugaACGguccgCGAGGCCGGCc -3'
miRNA:   3'- -GGGGCUG-----------UGCauguaGUUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 56173 0.7 0.839095
Target:  5'- gCCCCGguGCACGUAgAgCAccGGGCC-GCGg -3'
miRNA:   3'- -GGGGC--UGUGCAUgUaGU--UCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 64675 0.7 0.847027
Target:  5'- aCCCGACuccUGUGCGacgacggCGAGGCgAGCGc -3'
miRNA:   3'- gGGGCUGu--GCAUGUa------GUUCCGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 111549 0.7 0.847027
Target:  5'- aCCCGuACAgGUAC-UCcGGcGCCAGCGc -3'
miRNA:   3'- gGGGC-UGUgCAUGuAGuUC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 84957 0.7 0.862321
Target:  5'- cCCCCGGCACGcGgAUCcuuGGCCccGGCc -3'
miRNA:   3'- -GGGGCUGUGCaUgUAGuu-CCGG--UCGc -5'
11089 3' -54.9 NC_002794.1 + 111309 0.7 0.839095
Target:  5'- gCCCGACGgagACG-CcGGGCCAGCGg -3'
miRNA:   3'- gGGGCUGUgcaUGUaGuUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 51362 0.7 0.839095
Target:  5'- gCCCGAgGCGgccgcccCGUCc-GGCCGGCGa -3'
miRNA:   3'- gGGGCUgUGCau-----GUAGuuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 151834 0.69 0.883751
Target:  5'- cCCCCGACGcCGUuCggCGAGGCguucauCGGCGc -3'
miRNA:   3'- -GGGGCUGU-GCAuGuaGUUCCG------GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 69192 0.69 0.890471
Target:  5'- uUCCGGCACGcgGCccgCAGcuuGGCCAGCa -3'
miRNA:   3'- gGGGCUGUGCa-UGua-GUU---CCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 42670 0.69 0.883751
Target:  5'- gCCgCCGGCACGgggUACGcCGAGaCCGGCGa -3'
miRNA:   3'- -GG-GGCUGUGC---AUGUaGUUCcGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 66528 0.69 0.883751
Target:  5'- uCCCCGGgucCGCGaAgGUCGGcGCCGGCGg -3'
miRNA:   3'- -GGGGCU---GUGCaUgUAGUUcCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 44706 0.69 0.876111
Target:  5'- gCCCGGCcgcgaccGCGgcgACGUC--GGCCGGCGc -3'
miRNA:   3'- gGGGCUG-------UGCa--UGUAGuuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 93990 0.69 0.876816
Target:  5'- gCUCGGCGCGgACGcCGgcgccggcggcGGGCCGGCGg -3'
miRNA:   3'- gGGGCUGUGCaUGUaGU-----------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 57382 0.69 0.886465
Target:  5'- aCCCCGcCACcUACGUCAccgGcuccggcgcccgcguGGCCGGCGu -3'
miRNA:   3'- -GGGGCuGUGcAUGUAGU---U---------------CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 116946 0.69 0.874695
Target:  5'- uCCCCGGCgGCG-GCGUCGgcgggcgcaggaacGGGCCcAGCa -3'
miRNA:   3'- -GGGGCUG-UGCaUGUAGU--------------UCCGG-UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.