Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 49592 | 0.69 | 0.896973 |
Target: 5'- aUCCCGAuCGCGaucgGCGacggCGGGcGCCGGCGg -3' miRNA: 3'- -GGGGCU-GUGCa---UGUa---GUUC-CGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 86924 | 0.69 | 0.903252 |
Target: 5'- gCCCGugGCGgGCAggCGGGGCgggaucCGGCGa -3' miRNA: 3'- gGGGCugUGCaUGUa-GUUCCG------GUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 117239 | 0.69 | 0.902634 |
Target: 5'- -aCCGACGCGUGCA-CGAacuucuuggccucGGCCAGaCa -3' miRNA: 3'- ggGGCUGUGCAUGUaGUU-------------CCGGUC-Gc -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 151834 | 0.69 | 0.883751 |
Target: 5'- cCCCCGACGcCGUuCggCGAGGCguucauCGGCGc -3' miRNA: 3'- -GGGGCUGU-GCAuGuaGUUCCG------GUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 33857 | 0.69 | 0.896973 |
Target: 5'- -gCCGGCACGaGC-UCAAcaGCCAGCGg -3' miRNA: 3'- ggGGCUGUGCaUGuAGUUc-CGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 71223 | 0.69 | 0.890471 |
Target: 5'- gUCCCGGcCGCGUA-GUgGcGGCCGGCGu -3' miRNA: 3'- -GGGGCU-GUGCAUgUAgUuCCGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 142821 | 0.69 | 0.890471 |
Target: 5'- gCCUCGuucaACGCGUGCGcguucagguUCAGGGCCuccccgcugAGCGa -3' miRNA: 3'- -GGGGC----UGUGCAUGU---------AGUUCCGG---------UCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 118851 | 0.69 | 0.890471 |
Target: 5'- uCgCUGACGCGcucGCAgaagucCAGGGCCAGCu -3' miRNA: 3'- -GgGGCUGUGCa--UGUa-----GUUCCGGUCGc -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 57382 | 0.69 | 0.886465 |
Target: 5'- aCCCCGcCACcUACGUCAccgGcuccggcgcccgcguGGCCGGCGu -3' miRNA: 3'- -GGGGCuGUGcAUGUAGU---U---------------CCGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 42670 | 0.69 | 0.883751 |
Target: 5'- gCCgCCGGCACGgggUACGcCGAGaCCGGCGa -3' miRNA: 3'- -GG-GGCUGUGC---AUGUaGUUCcGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 99251 | 0.68 | 0.915135 |
Target: 5'- aCCCCGcCGCGgagggGC-UCGGGGgcuCCGGCGc -3' miRNA: 3'- -GGGGCuGUGCa----UGuAGUUCC---GGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 137917 | 0.68 | 0.926103 |
Target: 5'- uCCCCGugGCGUucGCGgucgaugagcUgGAGGCagCGGCGg -3' miRNA: 3'- -GGGGCugUGCA--UGU----------AgUUCCG--GUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 111103 | 0.68 | 0.909307 |
Target: 5'- gCCCGGCGggacCGUGgcCGUCGacGGcGCCGGCGg -3' miRNA: 3'- gGGGCUGU----GCAU--GUAGU--UC-CGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 87044 | 0.68 | 0.915135 |
Target: 5'- -aCCGGCGCG-GC-UCGGGGCCGGg- -3' miRNA: 3'- ggGGCUGUGCaUGuAGUUCCGGUCgc -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 184178 | 0.68 | 0.909307 |
Target: 5'- aCCCGACACcgcgGCGcccggCGAGGCCcGCu -3' miRNA: 3'- gGGGCUGUGca--UGUa----GUUCCGGuCGc -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 186996 | 0.68 | 0.915135 |
Target: 5'- uCCgCCGGCuGCGU-CGUCAGGuaCGGCGu -3' miRNA: 3'- -GG-GGCUG-UGCAuGUAGUUCcgGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 60083 | 0.68 | 0.920734 |
Target: 5'- gCCCGcGCAgGUGCucCAcGGCCAGCu -3' miRNA: 3'- gGGGC-UGUgCAUGuaGUuCCGGUCGc -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 143409 | 0.68 | 0.915135 |
Target: 5'- -aCCGGCGCGggccggGCgaagGUCcggAAGGCCAGCa -3' miRNA: 3'- ggGGCUGUGCa-----UG----UAG---UUCCGGUCGc -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 126239 | 0.68 | 0.909307 |
Target: 5'- -aCCGugGCGaucgugGCGcgCGAGGUCGGCGg -3' miRNA: 3'- ggGGCugUGCa-----UGUa-GUUCCGGUCGC- -5' |
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11089 | 3' | -54.9 | NC_002794.1 | + | 118018 | 0.68 | 0.909307 |
Target: 5'- aCCUGGCagGCGUAgAUCAgcuccagcAGGCgAGCGu -3' miRNA: 3'- gGGGCUG--UGCAUgUAGU--------UCCGgUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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