Results 21 - 40 of 134 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 193001 | 0.71 | 0.814242 |
Target: 5'- gCCCGGCGUGUGCAgc---GCCAGCGg -3' miRNA: 3'- gGGGCUGUGCAUGUaguucCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 23682 | 0.7 | 0.830982 |
Target: 5'- uCCCCGaACACGcGCcgcCGAGGCCccgaAGCGu -3' miRNA: 3'- -GGGGC-UGUGCaUGua-GUUCCGG----UCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 56173 | 0.7 | 0.839095 |
Target: 5'- gCCCCGguGCACGUAgAgCAccGGGCC-GCGg -3' miRNA: 3'- -GGGGC--UGUGCAUgUaGU--UCCGGuCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 51362 | 0.7 | 0.839095 |
Target: 5'- gCCCGAgGCGgccgcccCGUCc-GGCCGGCGa -3' miRNA: 3'- gGGGCUgUGCau-----GUAGuuCCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 111309 | 0.7 | 0.839095 |
Target: 5'- gCCCGACGgagACG-CcGGGCCAGCGg -3' miRNA: 3'- gGGGCUGUgcaUGUaGuUCCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 124250 | 0.7 | 0.839095 |
Target: 5'- uCCCCGcGCGCGgguaGUCGccGGCCAGCc -3' miRNA: 3'- -GGGGC-UGUGCaug-UAGUu-CCGGUCGc -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 64675 | 0.7 | 0.847027 |
Target: 5'- aCCCGACuccUGUGCGacgacggCGAGGCgAGCGc -3' miRNA: 3'- gGGGCUGu--GCAUGUa------GUUCCGgUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 111549 | 0.7 | 0.847027 |
Target: 5'- aCCCGuACAgGUAC-UCcGGcGCCAGCGc -3' miRNA: 3'- gGGGC-UGUgCAUGuAGuUC-CGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 21850 | 0.7 | 0.847027 |
Target: 5'- aCCCCGAUcgccccauugaACGguccgCGAGGCCGGCc -3' miRNA: 3'- -GGGGCUG-----------UGCauguaGUUCCGGUCGc -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 157659 | 0.7 | 0.854771 |
Target: 5'- aUCCCGACGCGcugGCGgcuuGGGCCgcuuGGCGu -3' miRNA: 3'- -GGGGCUGUGCa--UGUagu-UCCGG----UCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 66715 | 0.7 | 0.854771 |
Target: 5'- gCCCGGCACGgcCGccgcCAccGCCGGCGg -3' miRNA: 3'- gGGGCUGUGCauGUa---GUucCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 84957 | 0.7 | 0.862321 |
Target: 5'- cCCCCGGCACGcGgAUCcuuGGCCccGGCc -3' miRNA: 3'- -GGGGCUGUGCaUgUAGuu-CCGG--UCGc -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 14741 | 0.69 | 0.867487 |
Target: 5'- gUCCGGCGCGUcaucggagcccgaaGcCGUCGaggccgcugAGGCCGGCGa -3' miRNA: 3'- gGGGCUGUGCA--------------U-GUAGU---------UCCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 116946 | 0.69 | 0.874695 |
Target: 5'- uCCCCGGCgGCG-GCGUCGgcgggcgcaggaacGGGCCcAGCa -3' miRNA: 3'- -GGGGCUG-UGCaUGUAGU--------------UCCGG-UCGc -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 44706 | 0.69 | 0.876111 |
Target: 5'- gCCCGGCcgcgaccGCGgcgACGUC--GGCCGGCGc -3' miRNA: 3'- gGGGCUG-------UGCa--UGUAGuuCCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 93990 | 0.69 | 0.876816 |
Target: 5'- gCUCGGCGCGgACGcCGgcgccggcggcGGGCCGGCGg -3' miRNA: 3'- gGGGCUGUGCaUGUaGU-----------UCCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 42670 | 0.69 | 0.883751 |
Target: 5'- gCCgCCGGCACGgggUACGcCGAGaCCGGCGa -3' miRNA: 3'- -GG-GGCUGUGC---AUGUaGUUCcGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 66528 | 0.69 | 0.883751 |
Target: 5'- uCCCCGGgucCGCGaAgGUCGGcGCCGGCGg -3' miRNA: 3'- -GGGGCU---GUGCaUgUAGUUcCGGUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 151834 | 0.69 | 0.883751 |
Target: 5'- cCCCCGACGcCGUuCggCGAGGCguucauCGGCGc -3' miRNA: 3'- -GGGGCUGU-GCAuGuaGUUCCG------GUCGC- -5' |
|||||||
11089 | 3' | -54.9 | NC_002794.1 | + | 57382 | 0.69 | 0.886465 |
Target: 5'- aCCCCGcCACcUACGUCAccgGcuccggcgcccgcguGGCCGGCGu -3' miRNA: 3'- -GGGGCuGUGcAUGUAGU---U---------------CCGGUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home