miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 69192 0.69 0.890471
Target:  5'- uUCCGGCACGcgGCccgCAGcuuGGCCAGCa -3'
miRNA:   3'- gGGGCUGUGCa-UGua-GUU---CCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 71223 0.69 0.890471
Target:  5'- gUCCCGGcCGCGUA-GUgGcGGCCGGCGu -3'
miRNA:   3'- -GGGGCU-GUGCAUgUAgUuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 118851 0.69 0.890471
Target:  5'- uCgCUGACGCGcucGCAgaagucCAGGGCCAGCu -3'
miRNA:   3'- -GgGGCUGUGCa--UGUa-----GUUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 142821 0.69 0.890471
Target:  5'- gCCUCGuucaACGCGUGCGcguucagguUCAGGGCCuccccgcugAGCGa -3'
miRNA:   3'- -GGGGC----UGUGCAUGU---------AGUUCCGG---------UCGC- -5'
11089 3' -54.9 NC_002794.1 + 78324 0.69 0.893098
Target:  5'- cUCCCGGCGCG-ACGggCGGaggcgccggaaugucGGCCAGCa -3'
miRNA:   3'- -GGGGCUGUGCaUGUa-GUU---------------CCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 33857 0.69 0.896973
Target:  5'- -gCCGGCACGaGC-UCAAcaGCCAGCGg -3'
miRNA:   3'- ggGGCUGUGCaUGuAGUUc-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 49592 0.69 0.896973
Target:  5'- aUCCCGAuCGCGaucgGCGacggCGGGcGCCGGCGg -3'
miRNA:   3'- -GGGGCU-GUGCa---UGUa---GUUC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 66811 0.69 0.896973
Target:  5'- gCCCGGCAU---CGUCAGGGCgccCGGCGc -3'
miRNA:   3'- gGGGCUGUGcauGUAGUUCCG---GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 117239 0.69 0.902634
Target:  5'- -aCCGACGCGUGCA-CGAacuucuuggccucGGCCAGaCa -3'
miRNA:   3'- ggGGCUGUGCAUGUaGUU-------------CCGGUC-Gc -5'
11089 3' -54.9 NC_002794.1 + 86924 0.69 0.903252
Target:  5'- gCCCGugGCGgGCAggCGGGGCgggaucCGGCGa -3'
miRNA:   3'- gGGGCugUGCaUGUa-GUUCCG------GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 126239 0.68 0.909307
Target:  5'- -aCCGugGCGaucgugGCGcgCGAGGUCGGCGg -3'
miRNA:   3'- ggGGCugUGCa-----UGUa-GUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 184178 0.68 0.909307
Target:  5'- aCCCGACACcgcgGCGcccggCGAGGCCcGCu -3'
miRNA:   3'- gGGGCUGUGca--UGUa----GUUCCGGuCGc -5'
11089 3' -54.9 NC_002794.1 + 111103 0.68 0.909307
Target:  5'- gCCCGGCGggacCGUGgcCGUCGacGGcGCCGGCGg -3'
miRNA:   3'- gGGGCUGU----GCAU--GUAGU--UC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 118018 0.68 0.909307
Target:  5'- aCCUGGCagGCGUAgAUCAgcuccagcAGGCgAGCGu -3'
miRNA:   3'- gGGGCUG--UGCAUgUAGU--------UCCGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53107 0.68 0.914562
Target:  5'- aCCCCGGCgguuccggagcucGCGUcgaccgcgGCGcUCAgcccggcauAGGCCAGCGc -3'
miRNA:   3'- -GGGGCUG-------------UGCA--------UGU-AGU---------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 186996 0.68 0.915135
Target:  5'- uCCgCCGGCuGCGU-CGUCAGGuaCGGCGu -3'
miRNA:   3'- -GG-GGCUG-UGCAuGUAGUUCcgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 87044 0.68 0.915135
Target:  5'- -aCCGGCGCG-GC-UCGGGGCCGGg- -3'
miRNA:   3'- ggGGCUGUGCaUGuAGUUCCGGUCgc -5'
11089 3' -54.9 NC_002794.1 + 99251 0.68 0.915135
Target:  5'- aCCCCGcCGCGgagggGC-UCGGGGgcuCCGGCGc -3'
miRNA:   3'- -GGGGCuGUGCa----UGuAGUUCC---GGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 103264 0.68 0.915135
Target:  5'- gCCCUG-CACG-AUGUCcAGGaCCAGCGc -3'
miRNA:   3'- -GGGGCuGUGCaUGUAGuUCC-GGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 119370 0.68 0.915135
Target:  5'- uCCUCGuuCGCGUG-GUCGagcuGGGCCAGCa -3'
miRNA:   3'- -GGGGCu-GUGCAUgUAGU----UCCGGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.