miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 42956 0.67 0.936152
Target:  5'- gCCCaGCacgGCGUGgAUguAGGCCAGCu -3'
miRNA:   3'- gGGGcUG---UGCAUgUAguUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 43107 0.66 0.970321
Target:  5'- uCCCCG-CGCu--CGUCcagGAGGCgGGCGa -3'
miRNA:   3'- -GGGGCuGUGcauGUAG---UUCCGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 44706 0.69 0.876111
Target:  5'- gCCCGGCcgcgaccGCGgcgACGUC--GGCCGGCGc -3'
miRNA:   3'- gGGGCUG-------UGCa--UGUAGuuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 45910 0.67 0.957299
Target:  5'- gCCgCCGGCACcggGCGaCGAGGCUcGCGc -3'
miRNA:   3'- -GG-GGCUGUGca-UGUaGUUCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 46190 0.67 0.940832
Target:  5'- aCCCCGGCAcCGcGCucgcucgccgccGUUccGGCCAGCu -3'
miRNA:   3'- -GGGGCUGU-GCaUG------------UAGuuCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 47931 0.66 0.964224
Target:  5'- aCCCCGACGCagaucggcgccGcGCGUCccGGcGCCGGCu -3'
miRNA:   3'- -GGGGCUGUG-----------CaUGUAGu-UC-CGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 48514 0.67 0.936152
Target:  5'- gCCCGAUcgACGUACAgCAcgcacaggcucGGGUCGGCc -3'
miRNA:   3'- gGGGCUG--UGCAUGUaGU-----------UCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 48619 0.71 0.787957
Target:  5'- gCCUCaGACGCGgagcggcCGUCGGGGCCcGCGa -3'
miRNA:   3'- -GGGG-CUGUGCau-----GUAGUUCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 48871 0.67 0.940832
Target:  5'- uCCCCGucgGCGgcCAgguggC-AGGCCAGCGu -3'
miRNA:   3'- -GGGGCug-UGCauGUa----GuUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 49037 0.66 0.964224
Target:  5'- gUCCGGCGCGgucgucaGCGUcCAGGGCgcgCAGCa -3'
miRNA:   3'- gGGGCUGUGCa------UGUA-GUUCCG---GUCGc -5'
11089 3' -54.9 NC_002794.1 + 49592 0.69 0.896973
Target:  5'- aUCCCGAuCGCGaucgGCGacggCGGGcGCCGGCGg -3'
miRNA:   3'- -GGGGCU-GUGCa---UGUa---GUUC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 51362 0.7 0.839095
Target:  5'- gCCCGAgGCGgccgcccCGUCc-GGCCGGCGa -3'
miRNA:   3'- gGGGCUgUGCau-----GUAGuuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53107 0.68 0.914562
Target:  5'- aCCCCGGCgguuccggagcucGCGUcgaccgcgGCGcUCAgcccggcauAGGCCAGCGc -3'
miRNA:   3'- -GGGGCUG-------------UGCA--------UGU-AGU---------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53247 0.66 0.970321
Target:  5'- gCCCGcCGCGccgGCGUCGccgcgcgacaacGGGgCGGCGa -3'
miRNA:   3'- gGGGCuGUGCa--UGUAGU------------UCCgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53462 0.66 0.970321
Target:  5'- -gCCG-CACGcaaUGCGU-GAGGCCAGUGa -3'
miRNA:   3'- ggGGCuGUGC---AUGUAgUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53576 0.66 0.962235
Target:  5'- gCUCCGACagaaacaccgugucgGCGUcgGCGUCAccGGGCCgccgcAGCGu -3'
miRNA:   3'- -GGGGCUG---------------UGCA--UGUAGU--UCCGG-----UCGC- -5'
11089 3' -54.9 NC_002794.1 + 53899 0.67 0.957299
Target:  5'- aCUCCGGCgGCGUccuCGUCGccGUCGGCGg -3'
miRNA:   3'- -GGGGCUG-UGCAu--GUAGUucCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 55206 0.73 0.672997
Target:  5'- -aCCGGCGCG-GCG--GAGGCCGGCGg -3'
miRNA:   3'- ggGGCUGUGCaUGUagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 55621 0.67 0.953515
Target:  5'- gCCCGuGCACGcugGCcagCAcgcGGGCCGGCa -3'
miRNA:   3'- gGGGC-UGUGCa--UGua-GU---UCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 56173 0.7 0.839095
Target:  5'- gCCCCGguGCACGUAgAgCAccGGGCC-GCGg -3'
miRNA:   3'- -GGGGC--UGUGCAUgUaGU--UCCGGuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.