miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 57382 0.69 0.886465
Target:  5'- aCCCCGcCACcUACGUCAccgGcuccggcgcccgcguGGCCGGCGu -3'
miRNA:   3'- -GGGGCuGUGcAUGUAGU---U---------------CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 58872 0.68 0.931243
Target:  5'- -aCCGGCAgcCGUGCGcgccgcgcagcUCGAGGCCcGCa -3'
miRNA:   3'- ggGGCUGU--GCAUGU-----------AGUUCCGGuCGc -5'
11089 3' -54.9 NC_002794.1 + 59189 0.71 0.778004
Target:  5'- aCCCCGuggcggucgacgcGCACGUcgGCGUCucGGCC-GCGg -3'
miRNA:   3'- -GGGGC-------------UGUGCA--UGUAGuuCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 60083 0.68 0.920734
Target:  5'- gCCCGcGCAgGUGCucCAcGGCCAGCu -3'
miRNA:   3'- gGGGC-UGUgCAUGuaGUuCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 61949 0.66 0.967373
Target:  5'- gCCCCcAC-CGcccc-CGAGGCCAGCGg -3'
miRNA:   3'- -GGGGcUGuGCauguaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 64675 0.7 0.847027
Target:  5'- aCCCGACuccUGUGCGacgacggCGAGGCgAGCGc -3'
miRNA:   3'- gGGGCUGu--GCAUGUa------GUUCCGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 65346 0.67 0.953515
Target:  5'- aCCCCaaaACGUACA--GGGcGCCGGCGc -3'
miRNA:   3'- -GGGGcugUGCAUGUagUUC-CGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 66006 0.67 0.935671
Target:  5'- aUCCCGGCACcgaggcggccgcgGU-CGUCGccgucgucgucGGGCCGGCa -3'
miRNA:   3'- -GGGGCUGUG-------------CAuGUAGU-----------UCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 66528 0.69 0.883751
Target:  5'- uCCCCGGgucCGCGaAgGUCGGcGCCGGCGg -3'
miRNA:   3'- -GGGGCU---GUGCaUgUAGUUcCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 66715 0.7 0.854771
Target:  5'- gCCCGGCACGgcCGccgcCAccGCCGGCGg -3'
miRNA:   3'- gGGGCUGUGCauGUa---GUucCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 66811 0.69 0.896973
Target:  5'- gCCCGGCAU---CGUCAGGGCgccCGGCGc -3'
miRNA:   3'- gGGGCUGUGcauGUAGUUCCG---GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 66944 0.75 0.563026
Target:  5'- cCCCCGAgGCcc---UCGAGGCCGGCGa -3'
miRNA:   3'- -GGGGCUgUGcauguAGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 67390 0.67 0.945284
Target:  5'- gCgUCGGCGCcaGCGUCGGcGCCAGCGu -3'
miRNA:   3'- -GgGGCUGUGcaUGUAGUUcCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 69010 0.66 0.960867
Target:  5'- cCUCCucCGCGUGCG-CGAcGCCGGCGc -3'
miRNA:   3'- -GGGGcuGUGCAUGUaGUUcCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 69192 0.69 0.890471
Target:  5'- uUCCGGCACGcgGCccgCAGcuuGGCCAGCa -3'
miRNA:   3'- gGGGCUGUGCa-UGua-GUU---CCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 71223 0.69 0.890471
Target:  5'- gUCCCGGcCGCGUA-GUgGcGGCCGGCGu -3'
miRNA:   3'- -GGGGCU-GUGCAUgUAgUuCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 71253 0.66 0.960867
Target:  5'- -aCCGGCACGUAgAacUUGAGGuCCGcGCGg -3'
miRNA:   3'- ggGGCUGUGCAUgU--AGUUCC-GGU-CGC- -5'
11089 3' -54.9 NC_002794.1 + 71800 0.71 0.778004
Target:  5'- cCCCCGGCGgGcGCggCGAGGCCGccucgucGCGa -3'
miRNA:   3'- -GGGGCUGUgCaUGuaGUUCCGGU-------CGC- -5'
11089 3' -54.9 NC_002794.1 + 76813 0.67 0.936152
Target:  5'- aCCgGAC-CGgACGUCAcgccagcGGCCGGCGa -3'
miRNA:   3'- gGGgCUGuGCaUGUAGUu------CCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 78324 0.69 0.893098
Target:  5'- cUCCCGGCGCG-ACGggCGGaggcgccggaaugucGGCCAGCa -3'
miRNA:   3'- -GGGGCUGUGCaUGUa-GUU---------------CCGGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.