miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 179922 0.66 0.960867
Target:  5'- gCUCCGACgguuucgaagACG-ACGUCGcGGGCCGGgGa -3'
miRNA:   3'- -GGGGCUG----------UGCaUGUAGU-UCCGGUCgC- -5'
11089 3' -54.9 NC_002794.1 + 157659 0.7 0.854771
Target:  5'- aUCCCGACGCGcugGCGgcuuGGGCCgcuuGGCGu -3'
miRNA:   3'- -GGGGCUGUGCa--UGUagu-UCCGG----UCGC- -5'
11089 3' -54.9 NC_002794.1 + 156184 0.73 0.726183
Target:  5'- uUCgGACGCGU-CAUCGgagucgccggucggaGGGCCGGCGa -3'
miRNA:   3'- gGGgCUGUGCAuGUAGU---------------UCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 155458 0.66 0.973074
Target:  5'- gCCCGGCGCGUugAU--AGGCUuuauGGaCGa -3'
miRNA:   3'- gGGGCUGUGCAugUAguUCCGG----UC-GC- -5'
11089 3' -54.9 NC_002794.1 + 151834 0.69 0.883751
Target:  5'- cCCCCGACGcCGUuCggCGAGGCguucauCGGCGc -3'
miRNA:   3'- -GGGGCUGU-GCAuGuaGUUCCG------GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 151580 0.66 0.972807
Target:  5'- cCCCCGGCgGCGcGCGcCGccgccgcGGGCCcGCGg -3'
miRNA:   3'- -GGGGCUG-UGCaUGUaGU-------UCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 150643 0.78 0.431616
Target:  5'- aUCCCGGCACGcGCGUCGaccuGGGCUGGCc -3'
miRNA:   3'- -GGGGCUGUGCaUGUAGU----UCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 147150 0.67 0.957299
Target:  5'- gCCCCGGgGCc-GCG--AGGGCCAGCu -3'
miRNA:   3'- -GGGGCUgUGcaUGUagUUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 145763 0.67 0.936152
Target:  5'- aCCCCGAgcgagcgccaCGCGgaguCGUCcccGGCCGGCu -3'
miRNA:   3'- -GGGGCU----------GUGCau--GUAGuu-CCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 144070 0.67 0.940832
Target:  5'- gCCCGACGCGUccgACGagGuGGCCuGGCu -3'
miRNA:   3'- gGGGCUGUGCA---UGUagUuCCGG-UCGc -5'
11089 3' -54.9 NC_002794.1 + 143409 0.68 0.915135
Target:  5'- -aCCGGCGCGggccggGCgaagGUCcggAAGGCCAGCa -3'
miRNA:   3'- ggGGCUGUGCa-----UG----UAG---UUCCGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 143276 0.67 0.945284
Target:  5'- gCCCGGCGcCGgcCGcUCGGGGUCGGgCGg -3'
miRNA:   3'- gGGGCUGU-GCauGU-AGUUCCGGUC-GC- -5'
11089 3' -54.9 NC_002794.1 + 142821 0.69 0.890471
Target:  5'- gCCUCGuucaACGCGUGCGcguucagguUCAGGGCCuccccgcugAGCGa -3'
miRNA:   3'- -GGGGC----UGUGCAUGU---------AGUUCCGG---------UCGC- -5'
11089 3' -54.9 NC_002794.1 + 141619 0.66 0.973074
Target:  5'- -aCCGGCucGCGgucuagcgACGggAAGGCCGGCGu -3'
miRNA:   3'- ggGGCUG--UGCa-------UGUagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 137917 0.68 0.926103
Target:  5'- uCCCCGugGCGUucGCGgucgaugagcUgGAGGCagCGGCGg -3'
miRNA:   3'- -GGGGCugUGCA--UGU----------AgUUCCG--GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 131705 0.67 0.953515
Target:  5'- aCCCCGAC-CGgACccCGAGaGCgAGCGa -3'
miRNA:   3'- -GGGGCUGuGCaUGuaGUUC-CGgUCGC- -5'
11089 3' -54.9 NC_002794.1 + 130006 0.67 0.936152
Target:  5'- gCCCCGGaGCGUGCGggucGGCCucgcGCGa -3'
miRNA:   3'- -GGGGCUgUGCAUGUaguuCCGGu---CGC- -5'
11089 3' -54.9 NC_002794.1 + 126592 0.66 0.970321
Target:  5'- -aCCGGgACuGaGCGcCGAGGCCGGCGc -3'
miRNA:   3'- ggGGCUgUG-CaUGUaGUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 126355 0.67 0.951139
Target:  5'- gUCCCGGCuccgauuucgccgcuGCGUggGCGcCGGGGCCuGCGc -3'
miRNA:   3'- -GGGGCUG---------------UGCA--UGUaGUUCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 126239 0.68 0.909307
Target:  5'- -aCCGugGCGaucgugGCGcgCGAGGUCGGCGg -3'
miRNA:   3'- ggGGCugUGCa-----UGUa-GUUCCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.