miRNA display CGI


Results 41 - 60 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 3' -54.9 NC_002794.1 + 151580 0.66 0.972807
Target:  5'- cCCCCGGCgGCGcGCGcCGccgccgcGGGCCcGCGg -3'
miRNA:   3'- -GGGGCUG-UGCaUGUaGU-------UCCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 155458 0.66 0.973074
Target:  5'- gCCCGGCGCGUugAU--AGGCUuuauGGaCGa -3'
miRNA:   3'- gGGGCUGUGCAugUAguUCCGG----UC-GC- -5'
11089 3' -54.9 NC_002794.1 + 188706 0.66 0.973074
Target:  5'- gCCCGugcGCACGcacaccGCGUaCAGGGCCAGa- -3'
miRNA:   3'- gGGGC---UGUGCa-----UGUA-GUUCCGGUCgc -5'
11089 3' -54.9 NC_002794.1 + 141619 0.66 0.973074
Target:  5'- -aCCGGCucGCGgucuagcgACGggAAGGCCGGCGu -3'
miRNA:   3'- ggGGCUG--UGCa-------UGUagUUCCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 79975 0.66 0.974121
Target:  5'- cCCCCGGCuCGgcgACGagGAGGCggaggaggacgaggaCGGCGa -3'
miRNA:   3'- -GGGGCUGuGCa--UGUagUUCCG---------------GUCGC- -5'
11089 3' -54.9 NC_002794.1 + 26071 0.66 0.964224
Target:  5'- cCCCCGcGCACGccACG-CGGGG-CAGCGc -3'
miRNA:   3'- -GGGGC-UGUGCa-UGUaGUUCCgGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 47931 0.66 0.964224
Target:  5'- aCCCCGACGCagaucggcgccGcGCGUCccGGcGCCGGCu -3'
miRNA:   3'- -GGGGCUGUG-----------CaUGUAGu-UC-CGGUCGc -5'
11089 3' -54.9 NC_002794.1 + 14184 0.67 0.957299
Target:  5'- cCUCCGAgACGUcaGCGUCccGGCCcGCu -3'
miRNA:   3'- -GGGGCUgUGCA--UGUAGuuCCGGuCGc -5'
11089 3' -54.9 NC_002794.1 + 53899 0.67 0.957299
Target:  5'- aCUCCGGCgGCGUccuCGUCGccGUCGGCGg -3'
miRNA:   3'- -GGGGCUG-UGCAu--GUAGUucCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 109518 0.66 0.960867
Target:  5'- gCCCGGCccgcgcuCGUucgGCGUC-GGGCCGGgCGg -3'
miRNA:   3'- gGGGCUGu------GCA---UGUAGuUCCGGUC-GC- -5'
11089 3' -54.9 NC_002794.1 + 186778 0.66 0.960867
Target:  5'- gCUCCGACACGUAgCGcgCGAaGCC-GCGg -3'
miRNA:   3'- -GGGGCUGUGCAU-GUa-GUUcCGGuCGC- -5'
11089 3' -54.9 NC_002794.1 + 69010 0.66 0.960867
Target:  5'- cCUCCucCGCGUGCG-CGAcGCCGGCGc -3'
miRNA:   3'- -GGGGcuGUGCAUGUaGUUcCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 122676 0.66 0.960867
Target:  5'- gCCCGGC-UGUGCcgGUCGc-GCCAGCGc -3'
miRNA:   3'- gGGGCUGuGCAUG--UAGUucCGGUCGC- -5'
11089 3' -54.9 NC_002794.1 + 53576 0.66 0.962235
Target:  5'- gCUCCGACagaaacaccgugucgGCGUcgGCGUCAccGGGCCgccgcAGCGu -3'
miRNA:   3'- -GGGGCUG---------------UGCA--UGUAGU--UCCGG-----UCGC- -5'
11089 3' -54.9 NC_002794.1 + 179922 0.66 0.960867
Target:  5'- gCUCCGACgguuucgaagACG-ACGUCGcGGGCCGGgGa -3'
miRNA:   3'- -GGGGCUG----------UGCaUGUAGU-UCCGGUCgC- -5'
11089 3' -54.9 NC_002794.1 + 71253 0.66 0.960867
Target:  5'- -aCCGGCACGUAgAacUUGAGGuCCGcGCGg -3'
miRNA:   3'- ggGGCUGUGCAUgU--AGUUCC-GGU-CGC- -5'
11089 3' -54.9 NC_002794.1 + 99959 0.66 0.963897
Target:  5'- aCCgCCGACGgcgccagucUGUGCGUCAAcgucuucGGCCAGg- -3'
miRNA:   3'- -GG-GGCUGU---------GCAUGUAGUU-------CCGGUCgc -5'
11089 3' -54.9 NC_002794.1 + 14266 0.66 0.962235
Target:  5'- aCCCCGACcgaggUGUucggcuggagcgucaGCGUCGAGGCgCGGgGu -3'
miRNA:   3'- -GGGGCUGu----GCA---------------UGUAGUUCCG-GUCgC- -5'
11089 3' -54.9 NC_002794.1 + 190701 0.66 0.964224
Target:  5'- cUCCCGGCGCa-GCGUCGGGuucuCCAGCc -3'
miRNA:   3'- -GGGGCUGUGcaUGUAGUUCc---GGUCGc -5'
11089 3' -54.9 NC_002794.1 + 49037 0.66 0.964224
Target:  5'- gUCCGGCGCGgucgucaGCGUcCAGGGCgcgCAGCa -3'
miRNA:   3'- gGGGCUGUGCa------UGUA-GUUCCG---GUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.