miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 41623 0.66 0.609318
Target:  5'- cGAUGCCGGGaaUCCgguGCGACaggaugaaGGCGGcGAa -3'
miRNA:   3'- -CUGCGGCCC--AGG---CGCUGcg------CCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 116383 0.66 0.609318
Target:  5'- uGGCGUgCGGGUCgaaGaCGAaggUGUGGCGGGGc -3'
miRNA:   3'- -CUGCG-GCCCAGg--C-GCU---GCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 40614 0.66 0.609318
Target:  5'- cGGCGUccgacuccgCGGaGUCCGCGAgCGCGagcugaGCGGGc -3'
miRNA:   3'- -CUGCG---------GCC-CAGGCGCU-GCGC------CGCCCu -5'
11089 5' -65.4 NC_002794.1 + 38457 0.66 0.609318
Target:  5'- --aGCCGGcGcggCCGCGGCGCgcccuuuaugGGCGGaGGa -3'
miRNA:   3'- cugCGGCC-Ca--GGCGCUGCG----------CCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 127685 0.66 0.599979
Target:  5'- --aGCCcGGUCgggGCGACGUGGgUGGGAc -3'
miRNA:   3'- cugCGGcCCAGg--CGCUGCGCC-GCCCU- -5'
11089 5' -65.4 NC_002794.1 + 136103 0.66 0.599979
Target:  5'- aGACGUCGGcGUCCuGC-ACcUGGCGGGc -3'
miRNA:   3'- -CUGCGGCC-CAGG-CGcUGcGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 149257 0.66 0.599979
Target:  5'- cGGCGCCaccacccucGUCCccgccgGCGGCGCGGCGGc- -3'
miRNA:   3'- -CUGCGGcc-------CAGG------CGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 32560 0.66 0.599979
Target:  5'- cGGCaGCCGcGGauagUCGCG-CGCGGCGGu- -3'
miRNA:   3'- -CUG-CGGC-CCa---GGCGCuGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 114763 0.66 0.599979
Target:  5'- cGGCGCC-GGUCCuCG--GCGGCGaGGAg -3'
miRNA:   3'- -CUGCGGcCCAGGcGCugCGCCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 191659 0.66 0.599979
Target:  5'- -cCGCCGGGggacggCGcCGGCaGCGGCGGcGGc -3'
miRNA:   3'- cuGCGGCCCag----GC-GCUG-CGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 126607 0.66 0.599979
Target:  5'- cGAgGCCGGcG-CCGaCGuCGCGGCGuGAg -3'
miRNA:   3'- -CUgCGGCC-CaGGC-GCuGCGCCGCcCU- -5'
11089 5' -65.4 NC_002794.1 + 49398 0.66 0.599979
Target:  5'- -cCGCCGucggccacggcGG-CCGCGGCgGCGGCGGc- -3'
miRNA:   3'- cuGCGGC-----------CCaGGCGCUG-CGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 32290 0.66 0.599046
Target:  5'- cGACGCCGccgccgccgcggcGG-CCGCGccggcCGCGGCcGGAg -3'
miRNA:   3'- -CUGCGGC-------------CCaGGCGCu----GCGCCGcCCU- -5'
11089 5' -65.4 NC_002794.1 + 180669 0.66 0.594384
Target:  5'- -gUGCCGGGgaacucgccggccgcUCC-CGGCGCccGGCGGGc -3'
miRNA:   3'- cuGCGGCCC---------------AGGcGCUGCG--CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 182945 0.66 0.590659
Target:  5'- cGGCGCCGGGcUCGagcCGACGgCGGCcGGc -3'
miRNA:   3'- -CUGCGGCCCaGGC---GCUGC-GCCGcCCu -5'
11089 5' -65.4 NC_002794.1 + 19449 0.66 0.590659
Target:  5'- -cCGagCGGGcacgagCgGCGGCgGCGGCGGGAc -3'
miRNA:   3'- cuGCg-GCCCa-----GgCGCUG-CGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 192016 0.66 0.590659
Target:  5'- gGugGCCGcGGcugcuguuUCUGUGGCgGCGGCGGc- -3'
miRNA:   3'- -CugCGGC-CC--------AGGCGCUG-CGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 32870 0.66 0.590659
Target:  5'- -cCGgCGGG-CgGCGGCgGCGGCGGcGGc -3'
miRNA:   3'- cuGCgGCCCaGgCGCUG-CGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 193800 0.66 0.590659
Target:  5'- cGACGCCGGcGcCCGCucgucuggcgccGACGCGucGCGGc- -3'
miRNA:   3'- -CUGCGGCC-CaGGCG------------CUGCGC--CGCCcu -5'
11089 5' -65.4 NC_002794.1 + 115957 0.66 0.590659
Target:  5'- -uCGCCGGGgaCCGUGGgGgGgaGCGGGAc -3'
miRNA:   3'- cuGCGGCCCa-GGCGCUgCgC--CGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.