Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11089 | 5' | -65.4 | NC_002794.1 | + | 38457 | 0.66 | 0.609318 |
Target: 5'- --aGCCGGcGcggCCGCGGCGCgcccuuuaugGGCGGaGGa -3' miRNA: 3'- cugCGGCC-Ca--GGCGCUGCG----------CCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 49398 | 0.66 | 0.599979 |
Target: 5'- -cCGCCGucggccacggcGG-CCGCGGCgGCGGCGGc- -3' miRNA: 3'- cuGCGGC-----------CCaGGCGCUG-CGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 126607 | 0.66 | 0.599979 |
Target: 5'- cGAgGCCGGcG-CCGaCGuCGCGGCGuGAg -3' miRNA: 3'- -CUgCGGCC-CaGGC-GCuGCGCCGCcCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 191659 | 0.66 | 0.599979 |
Target: 5'- -cCGCCGGGggacggCGcCGGCaGCGGCGGcGGc -3' miRNA: 3'- cuGCGGCCCag----GC-GCUG-CGCCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 114763 | 0.66 | 0.599979 |
Target: 5'- cGGCGCC-GGUCCuCG--GCGGCGaGGAg -3' miRNA: 3'- -CUGCGGcCCAGGcGCugCGCCGC-CCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 32560 | 0.66 | 0.599979 |
Target: 5'- cGGCaGCCGcGGauagUCGCG-CGCGGCGGu- -3' miRNA: 3'- -CUG-CGGC-CCa---GGCGCuGCGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 44704 | 0.66 | 0.590659 |
Target: 5'- -cCGCCcGG-CCGCGAcCGCGGCGa-- -3' miRNA: 3'- cuGCGGcCCaGGCGCU-GCGCCGCccu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 180669 | 0.66 | 0.594384 |
Target: 5'- -gUGCCGGGgaacucgccggccgcUCC-CGGCGCccGGCGGGc -3' miRNA: 3'- cuGCGGCCC---------------AGGcGCUGCG--CCGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 127685 | 0.66 | 0.599979 |
Target: 5'- --aGCCcGGUCgggGCGACGUGGgUGGGAc -3' miRNA: 3'- cugCGGcCCAGg--CGCUGCGCC-GCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 32290 | 0.66 | 0.599046 |
Target: 5'- cGACGCCGccgccgccgcggcGG-CCGCGccggcCGCGGCcGGAg -3' miRNA: 3'- -CUGCGGC-------------CCaGGCGCu----GCGCCGcCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 136103 | 0.66 | 0.599979 |
Target: 5'- aGACGUCGGcGUCCuGC-ACcUGGCGGGc -3' miRNA: 3'- -CUGCGGCC-CAGG-CGcUGcGCCGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 149257 | 0.66 | 0.599979 |
Target: 5'- cGGCGCCaccacccucGUCCccgccgGCGGCGCGGCGGc- -3' miRNA: 3'- -CUGCGGcc-------CAGG------CGCUGCGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 136717 | 0.67 | 0.535448 |
Target: 5'- aGGCGCCGG-UCC-CGGCGUccaGGCGGu- -3' miRNA: 3'- -CUGCGGCCcAGGcGCUGCG---CCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 64832 | 0.67 | 0.544542 |
Target: 5'- cGGCGCCGacgaCCGgaCGGCGCGGCGGc- -3' miRNA: 3'- -CUGCGGCcca-GGC--GCUGCGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 177417 | 0.67 | 0.535448 |
Target: 5'- gGAU-CCGGGUuucuagaacUCGCGAUcCGGCGGGGa -3' miRNA: 3'- -CUGcGGCCCA---------GGCGCUGcGCCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 71755 | 0.67 | 0.544542 |
Target: 5'- -cCGCCGGcucuuccgaccgGUCCGCGccgucGCGCGGCGa-- -3' miRNA: 3'- cuGCGGCC------------CAGGCGC-----UGCGCCGCccu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 144992 | 0.67 | 0.544542 |
Target: 5'- cGGCGCCGGGcgUCCGCcuGGCGCaGCa--- -3' miRNA: 3'- -CUGCGGCCC--AGGCG--CUGCGcCGcccu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 114005 | 0.67 | 0.544542 |
Target: 5'- aGGCGCCGGaGga-GCGACucguacaGGCGGGGc -3' miRNA: 3'- -CUGCGGCC-CaggCGCUGcg-----CCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 106367 | 0.67 | 0.544542 |
Target: 5'- nGCGCCGGuUCgCGCGGagggcaGaCGGCGGGc -3' miRNA: 3'- cUGCGGCCcAG-GCGCUg-----C-GCCGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 58529 | 0.67 | 0.535448 |
Target: 5'- cACGCCGaGGccuucgCCGCGGCGCGcGCGc-- -3' miRNA: 3'- cUGCGGC-CCa-----GGCGCUGCGC-CGCccu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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