miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 55259 0.67 0.508508
Target:  5'- gGACGCCGaagagCCGgGGgGCGGCGGuGGc -3'
miRNA:   3'- -CUGCGGCcca--GGCgCUgCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 43897 0.67 0.508508
Target:  5'- -uCGCCGGcGUCuCGUGAggaGCGGCGcGGu -3'
miRNA:   3'- cuGCGGCC-CAG-GCGCUg--CGCCGC-CCu -5'
11089 5' -65.4 NC_002794.1 + 120051 0.67 0.50762
Target:  5'- cGGCGgCGGuGgcggCCGCggaggccGACGCGGCGGuGGc -3'
miRNA:   3'- -CUGCgGCC-Ca---GGCG-------CUGCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 137389 0.67 0.505844
Target:  5'- cGACGCggguccggucugucCGGcGUCCGCgGACGCcGCGGaGAc -3'
miRNA:   3'- -CUGCG--------------GCC-CAGGCG-CUGCGcCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 116111 0.67 0.517428
Target:  5'- cGAgGUCGaGGUcgaguccgCCGCGGCgGCGGCGGcGGc -3'
miRNA:   3'- -CUgCGGC-CCA--------GGCGCUG-CGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 184571 0.67 0.517428
Target:  5'- cGCGCCG---CCGCGGCgGCGGCGGc- -3'
miRNA:   3'- cUGCGGCccaGGCGCUG-CGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 190278 0.67 0.544542
Target:  5'- cGCGCCGGuagaaGUCCGUGucgaaGCGCcGGCGGc- -3'
miRNA:   3'- cUGCGGCC-----CAGGCGC-----UGCG-CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 106367 0.67 0.544542
Target:  5'- nGCGCCGGuUCgCGCGGagggcaGaCGGCGGGc -3'
miRNA:   3'- cUGCGGCCcAG-GCGCUg-----C-GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 114005 0.67 0.544542
Target:  5'- aGGCGCCGGaGga-GCGACucguacaGGCGGGGc -3'
miRNA:   3'- -CUGCGGCC-CaggCGCUGcg-----CCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 144992 0.67 0.544542
Target:  5'- cGGCGCCGGGcgUCCGCcuGGCGCaGCa--- -3'
miRNA:   3'- -CUGCGGCCC--AGGCG--CUGCGcCGcccu -5'
11089 5' -65.4 NC_002794.1 + 71755 0.67 0.544542
Target:  5'- -cCGCCGGcucuuccgaccgGUCCGCGccgucGCGCGGCGa-- -3'
miRNA:   3'- cuGCGGCC------------CAGGCGC-----UGCGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 177417 0.67 0.535448
Target:  5'- gGAU-CCGGGUuucuagaacUCGCGAUcCGGCGGGGa -3'
miRNA:   3'- -CUGcGGCCCA---------GGCGCUGcGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 64832 0.67 0.544542
Target:  5'- cGGCGCCGacgaCCGgaCGGCGCGGCGGc- -3'
miRNA:   3'- -CUGCGGCcca-GGC--GCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 136717 0.67 0.535448
Target:  5'- aGGCGCCGG-UCC-CGGCGUccaGGCGGu- -3'
miRNA:   3'- -CUGCGGCCcAGGcGCUGCG---CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 58529 0.67 0.535448
Target:  5'- cACGCCGaGGccuucgCCGCGGCGCGcGCGc-- -3'
miRNA:   3'- cUGCGGC-CCa-----GGCGCUGCGC-CGCccu -5'
11089 5' -65.4 NC_002794.1 + 134107 0.67 0.526409
Target:  5'- gGACGaCGGacccccuccGUCCGaCGGCGCGGCGagcgcGGAa -3'
miRNA:   3'- -CUGCgGCC---------CAGGC-GCUGCGCCGC-----CCU- -5'
11089 5' -65.4 NC_002794.1 + 187917 0.67 0.525508
Target:  5'- -cCGCCGGGccccgCCGCGAccgucgcgucaCGCGugcgcgcgcgagcGCGGGAc -3'
miRNA:   3'- cuGCGGCCCa----GGCGCU-----------GCGC-------------CGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 92311 0.67 0.517428
Target:  5'- --nGCUGGG--CGCGG-GCGGCGGGGg -3'
miRNA:   3'- cugCGGCCCagGCGCUgCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 122183 0.68 0.473519
Target:  5'- cGGCGCgCGcGUgUGCGACGCGGCGa-- -3'
miRNA:   3'- -CUGCG-GCcCAgGCGCUGCGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 110305 0.68 0.465812
Target:  5'- -cCGCgGGGacucuccgcucgccgCCGCGACGcCGcGCGGGGg -3'
miRNA:   3'- cuGCGgCCCa--------------GGCGCUGC-GC-CGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.