miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 14605 0.79 0.092911
Target:  5'- cGCGCCGGGcaCCGCGACGgGGCcGGAg -3'
miRNA:   3'- cUGCGGCCCa-GGCGCUGCgCCGcCCU- -5'
11089 5' -65.4 NC_002794.1 + 141438 0.78 0.110003
Target:  5'- gGGCGCCGGGggcgCCgggaGCGGCGCGGCGuccGGAc -3'
miRNA:   3'- -CUGCGGCCCa---GG----CGCUGCGCCGC---CCU- -5'
11089 5' -65.4 NC_002794.1 + 92272 0.78 0.111866
Target:  5'- cGGCGCCGGGcgaggcgcgcaaggUCgGCGACGaGGCGGGGc -3'
miRNA:   3'- -CUGCGGCCC--------------AGgCGCUGCgCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 64788 0.78 0.117352
Target:  5'- cGACGCCGGuUCCGCGGCGagcgacgccgcggaCGGCGGcGAg -3'
miRNA:   3'- -CUGCGGCCcAGGCGCUGC--------------GCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 20375 0.77 0.13957
Target:  5'- uGCGCCGGaucGUCgaCGCGGUGCGGCGGGAc -3'
miRNA:   3'- cUGCGGCC---CAG--GCGCUGCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 121404 0.76 0.149774
Target:  5'- cGGCGCCGGGaCCGCGAcCGuCGcCGGGAc -3'
miRNA:   3'- -CUGCGGCCCaGGCGCU-GC-GCcGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 115880 0.75 0.168296
Target:  5'- gGGCGuCCGGGgcgUCCGCGgaGCGCGGgGGGu -3'
miRNA:   3'- -CUGC-GGCCC---AGGCGC--UGCGCCgCCCu -5'
11089 5' -65.4 NC_002794.1 + 140013 0.75 0.168296
Target:  5'- gGAgGCCGcGGaggCCGCGGCccccgcggGCGGCGGGAg -3'
miRNA:   3'- -CUgCGGC-CCa--GGCGCUG--------CGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 34871 0.75 0.172238
Target:  5'- gGGCGCCGcGGacgCCGCGaACGCGGaaccaGGGAu -3'
miRNA:   3'- -CUGCGGC-CCa--GGCGC-UGCGCCg----CCCU- -5'
11089 5' -65.4 NC_002794.1 + 53770 0.75 0.176263
Target:  5'- cGGCGgCGGGacgcCCGCGACGCgcccGGCGGGu -3'
miRNA:   3'- -CUGCgGCCCa---GGCGCUGCG----CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 45022 0.75 0.184564
Target:  5'- cGugGCCGGGugcUCCGCacccaGCGCGGUGGcGAg -3'
miRNA:   3'- -CugCGGCCC---AGGCGc----UGCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 102165 0.75 0.184564
Target:  5'- cGCGCCGGGgccaUCGUGgcGCGCGGCGaGGAc -3'
miRNA:   3'- cUGCGGCCCa---GGCGC--UGCGCCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 126382 0.74 0.193208
Target:  5'- gGGCGCCGGGgcCUGCGcggcggcguGCGCGGCGGu- -3'
miRNA:   3'- -CUGCGGCCCa-GGCGC---------UGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 14649 0.74 0.201747
Target:  5'- aGACGCCGGcG-CCGCGGCgucgguccgacucGCGGCGGcGGu -3'
miRNA:   3'- -CUGCGGCC-CaGGCGCUG-------------CGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 93999 0.74 0.202205
Target:  5'- gGACGCCGGcGcCgGCGGCGggcCGGCGGGu -3'
miRNA:   3'- -CUGCGGCC-CaGgCGCUGC---GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 156406 0.74 0.202205
Target:  5'- cGGCGCCGcGG-CCGCGGCcacggcCGGCGGGu -3'
miRNA:   3'- -CUGCGGC-CCaGGCGCUGc-----GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 37739 0.74 0.206839
Target:  5'- cGGCGCCGccGG-CgGCGGCGCGGCGGc- -3'
miRNA:   3'- -CUGCGGC--CCaGgCGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 82472 0.74 0.211563
Target:  5'- cGACGCCGucGGccUCCGCGACGCGGCc--- -3'
miRNA:   3'- -CUGCGGC--CC--AGGCGCUGCGCCGcccu -5'
11089 5' -65.4 NC_002794.1 + 143279 0.74 0.216381
Target:  5'- cGGCGCCggccgcucgGGGUCgGgCGggugcaGCGCGGCGGGAu -3'
miRNA:   3'- -CUGCGG---------CCCAGgC-GC------UGCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 47741 0.74 0.221292
Target:  5'- -cCGCCGGGUCCaCGugGCGGcCGuGGu -3'
miRNA:   3'- cuGCGGCCCAGGcGCugCGCC-GC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.