miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 112338 0.73 0.226298
Target:  5'- cGCGCCGGccggcggcgCCgGCGGCGgGGCGGGGa -3'
miRNA:   3'- cUGCGGCCca-------GG-CGCUGCgCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 138667 0.73 0.226298
Target:  5'- -cUGCgGauuGGUCUGCGugGCGGCGGGu -3'
miRNA:   3'- cuGCGgC---CCAGGCGCugCGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 62062 0.73 0.2314
Target:  5'- cGACGCCGG--CgGCGACGcCGGCGGcGAc -3'
miRNA:   3'- -CUGCGGCCcaGgCGCUGC-GCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 95824 0.73 0.2314
Target:  5'- cGGCgGCCGGGggagCgGCGGCgGCGGcCGGGGa -3'
miRNA:   3'- -CUG-CGGCCCa---GgCGCUG-CGCC-GCCCU- -5'
11089 5' -65.4 NC_002794.1 + 102362 0.73 0.233467
Target:  5'- -gUGCCGcuucgugaagacgguGGUCCGCGACGUGGUGGa- -3'
miRNA:   3'- cuGCGGC---------------CCAGGCGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 142494 0.73 0.236598
Target:  5'- cGGCGCCGGca--GCGACGUGGCGGa- -3'
miRNA:   3'- -CUGCGGCCcaggCGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 72541 0.73 0.241893
Target:  5'- cGCGCCGcgcguGGUCgCGCaACGCGGCcGGGAa -3'
miRNA:   3'- cUGCGGC-----CCAG-GCGcUGCGCCG-CCCU- -5'
11089 5' -65.4 NC_002794.1 + 112296 0.73 0.241893
Target:  5'- gGGCGgccccCCGGGUCCGacuuCGGCGCcgacGGCGGGGa -3'
miRNA:   3'- -CUGC-----GGCCCAGGC----GCUGCG----CCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 44308 0.73 0.252781
Target:  5'- cGAgGCgGGGagcgaCCGCGAgCGCGGCGGcGAa -3'
miRNA:   3'- -CUgCGgCCCa----GGCGCU-GCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 111318 0.72 0.263494
Target:  5'- aGACGCCGGG-CCaGCGGCGCGGgccgcagaucugcCGGa- -3'
miRNA:   3'- -CUGCGGCCCaGG-CGCUGCGCC-------------GCCcu -5'
11089 5' -65.4 NC_002794.1 + 36916 0.72 0.269863
Target:  5'- cGGCGCCGGccCCGCGAcCGCGGa-GGAg -3'
miRNA:   3'- -CUGCGGCCcaGGCGCU-GCGCCgcCCU- -5'
11089 5' -65.4 NC_002794.1 + 142137 0.72 0.27576
Target:  5'- cGAcCGCCGGGUCacgGCGGagGCGGCGGu- -3'
miRNA:   3'- -CU-GCGGCCCAGg--CGCUg-CGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 34727 0.72 0.28176
Target:  5'- cGAgGCgCGGGcggCCGCagagcgcgcgacGGCGCGGUGGGAc -3'
miRNA:   3'- -CUgCG-GCCCa--GGCG------------CUGCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 107540 0.72 0.28176
Target:  5'- cGGCGCCGGcGg-CGaCGAcCGCGGUGGGGg -3'
miRNA:   3'- -CUGCGGCC-CagGC-GCU-GCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 44347 0.72 0.287863
Target:  5'- cGGCGCCGGcGagaCCGagaGCGCGGCGGGc -3'
miRNA:   3'- -CUGCGGCC-Ca--GGCgc-UGCGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 66837 0.71 0.30038
Target:  5'- cGACuCCGGGcgccgCCGuCGGCGCGGCGaGGc -3'
miRNA:   3'- -CUGcGGCCCa----GGC-GCUGCGCCGC-CCu -5'
11089 5' -65.4 NC_002794.1 + 184509 0.71 0.30038
Target:  5'- cGGCGCgGGccCCGCG-CGCGGCGcGGGc -3'
miRNA:   3'- -CUGCGgCCcaGGCGCuGCGCCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 115992 0.71 0.306794
Target:  5'- cGGCGCCGcGGagaCCGCGGagacCGCGGUGGcGAu -3'
miRNA:   3'- -CUGCGGC-CCa--GGCGCU----GCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 105821 0.71 0.313313
Target:  5'- cGCGaCCGGGUCgGuCGA-GCGaGCGGGAc -3'
miRNA:   3'- cUGC-GGCCCAGgC-GCUgCGC-CGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 21877 0.71 0.317938
Target:  5'- cGAgGCCGGccgcgggguGUCCGCGGCcugcgucgguggugGCGGCGGaGAc -3'
miRNA:   3'- -CUgCGGCC---------CAGGCGCUG--------------CGCCGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.