miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 137649 0.71 0.319936
Target:  5'- gGGCGCCGGGccUCCgGCGcCGCuGGUGcGGAc -3'
miRNA:   3'- -CUGCGGCCC--AGG-CGCuGCG-CCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 138943 0.71 0.319936
Target:  5'- uGCGCCcccaccguGGcGUgCUGCGACGCGGCGGa- -3'
miRNA:   3'- cUGCGG--------CC-CA-GGCGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 95760 0.71 0.326663
Target:  5'- -uCGCgGGGcggcggCCGCGACgGCGGcCGGGGc -3'
miRNA:   3'- cuGCGgCCCa-----GGCGCUG-CGCC-GCCCU- -5'
11089 5' -65.4 NC_002794.1 + 90463 0.71 0.326663
Target:  5'- -uCGgCGaGG-CCGCG-CGCGGCGGGGc -3'
miRNA:   3'- cuGCgGC-CCaGGCGCuGCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 112232 0.71 0.326663
Target:  5'- gGGCGuCCaGGGccgCCGCGAacgcCGcCGGCGGGAc -3'
miRNA:   3'- -CUGC-GG-CCCa--GGCGCU----GC-GCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 185467 0.71 0.326663
Target:  5'- aACGCCGcGGgCgGCGGcCGCGGCGaGGGg -3'
miRNA:   3'- cUGCGGC-CCaGgCGCU-GCGCCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 180787 0.71 0.326663
Target:  5'- gGugGCCGGGgaucUCCguuugaGCGACGUcucggacucugGGCGGGGa -3'
miRNA:   3'- -CugCGGCCC----AGG------CGCUGCG-----------CCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 87056 0.7 0.339733
Target:  5'- cGGgGCCGGGUCCuguaGCGACaGCacggugcaggccgGGCGGGu -3'
miRNA:   3'- -CUgCGGCCCAGG----CGCUG-CG-------------CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 41241 0.7 0.347471
Target:  5'- cACGCCGcGG-CCGcCGACGCcGGCGGc- -3'
miRNA:   3'- cUGCGGC-CCaGGC-GCUGCG-CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 107152 0.7 0.347471
Target:  5'- cGGCGCCcccggcgaGGGccgCCGCuACGCGGCGGa- -3'
miRNA:   3'- -CUGCGG--------CCCa--GGCGcUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 179624 0.7 0.350316
Target:  5'- cGACuGCCGGGcgCUGCGACGgaaaggagaagucaGGCGGGc -3'
miRNA:   3'- -CUG-CGGCCCa-GGCGCUGCg-------------CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 192424 0.7 0.354614
Target:  5'- cGCGaCGGGUCCGCGGC-CGGCGc-- -3'
miRNA:   3'- cUGCgGCCCAGGCGCUGcGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 94478 0.7 0.354614
Target:  5'- cGGCGgCGGcGgacgcggCCGCGGgcCGUGGCGGGGa -3'
miRNA:   3'- -CUGCgGCC-Ca------GGCGCU--GCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 116937 0.7 0.354614
Target:  5'- -uCGUCGGcGUCCccggcgGCGGCGuCGGCGGGc -3'
miRNA:   3'- cuGCGGCC-CAGG------CGCUGC-GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 113559 0.7 0.359676
Target:  5'- aGGCGCCGGaccGUCUGCGucucggcguccugcACGaCGGCGcGGAg -3'
miRNA:   3'- -CUGCGGCC---CAGGCGC--------------UGC-GCCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 135481 0.7 0.36186
Target:  5'- cGACGCCG---CCGuCGACGCGcGCGGGc -3'
miRNA:   3'- -CUGCGGCccaGGC-GCUGCGC-CGCCCu -5'
11089 5' -65.4 NC_002794.1 + 106346 0.7 0.36186
Target:  5'- -uCGCCGGGU-CGaCGGCG-GGCGGGc -3'
miRNA:   3'- cuGCGGCCCAgGC-GCUGCgCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 152041 0.7 0.376659
Target:  5'- aACGCCGaGUUCGCGAcCGCGGCcGGc -3'
miRNA:   3'- cUGCGGCcCAGGCGCU-GCGCCGcCCu -5'
11089 5' -65.4 NC_002794.1 + 53253 0.7 0.376659
Target:  5'- cGCGCCGGcGUcgCCGCGcgacaACGgGGCGGcGAg -3'
miRNA:   3'- cUGCGGCC-CA--GGCGC-----UGCgCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 66511 0.7 0.378913
Target:  5'- cGGCGagcgauaggccguccCCGGGUCCGCGaaggucgGCGCcGGCGGa- -3'
miRNA:   3'- -CUGC---------------GGCCCAGGCGC-------UGCG-CCGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.