miRNA display CGI


Results 61 - 80 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 154363 0.7 0.384209
Target:  5'- cGCGCgGuccaGG-CCGCGGCgGCGGCGGGc -3'
miRNA:   3'- cUGCGgC----CCaGGCGCUG-CGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 101250 0.69 0.39109
Target:  5'- cGGCGCgcagCGGGgggCCGCccccggcgccgguGGCgGCGGCGGGGa -3'
miRNA:   3'- -CUGCG----GCCCa--GGCG-------------CUG-CGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 56322 0.69 0.39186
Target:  5'- uGGCgGCCGuGGcCgGCGACGCGGCGa-- -3'
miRNA:   3'- -CUG-CGGC-CCaGgCGCUGCGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 107036 0.69 0.399609
Target:  5'- -cCGCUGGGgacccCCGCgucgGAgGCGGCGGGc -3'
miRNA:   3'- cuGCGGCCCa----GGCG----CUgCGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 61529 0.69 0.399609
Target:  5'- -cCGCCGGcGgccgCCGCGAagacgacgccgcCGCGGCGGcGGc -3'
miRNA:   3'- cuGCGGCC-Ca---GGCGCU------------GCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 69741 0.69 0.399609
Target:  5'- aGCGCCacGGcCgGCGACGCcGCGGGGa -3'
miRNA:   3'- cUGCGGc-CCaGgCGCUGCGcCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 118266 0.69 0.407455
Target:  5'- --gGCCGGGgCgGCGGCGCcGGCgucgGGGAc -3'
miRNA:   3'- cugCGGCCCaGgCGCUGCG-CCG----CCCU- -5'
11089 5' -65.4 NC_002794.1 + 110614 0.69 0.407455
Target:  5'- aGCGgagCGGGagCCGCGGCGCcgcggcGGCGGGGu -3'
miRNA:   3'- cUGCg--GCCCa-GGCGCUGCG------CCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 80421 0.69 0.407455
Target:  5'- uGGCGCCGGGcggggCCGCcGC-CGGCGGc- -3'
miRNA:   3'- -CUGCGGCCCa----GGCGcUGcGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 141645 0.69 0.407455
Target:  5'- --gGCCGGcGUggCCGCGGcCGcCGGCGGGu -3'
miRNA:   3'- cugCGGCC-CA--GGCGCU-GC-GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 58042 0.69 0.414598
Target:  5'- cGCGCCGcccguccccGUCgGCGGCcccggcgGCGGCGGGAc -3'
miRNA:   3'- cUGCGGCc--------CAGgCGCUG-------CGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 47945 0.69 0.415397
Target:  5'- cGGCGCCGcGcGUCC-CGGCGCcGGCuGGGc -3'
miRNA:   3'- -CUGCGGC-C-CAGGcGCUGCG-CCG-CCCu -5'
11089 5' -65.4 NC_002794.1 + 65158 0.69 0.422625
Target:  5'- -uCGCCGucccGUCCGUGGCGCcgagaccGGCGGGu -3'
miRNA:   3'- cuGCGGCc---CAGGCGCUGCG-------CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 103570 0.69 0.431562
Target:  5'- cGACGCCGuGG-CCGaCGAgcaGCGGuCGGGc -3'
miRNA:   3'- -CUGCGGC-CCaGGC-GCUg--CGCC-GCCCu -5'
11089 5' -65.4 NC_002794.1 + 111075 0.69 0.431562
Target:  5'- cGCGCUcccccgucggcaGGGUCgGCgGGCcCGGCGGGAc -3'
miRNA:   3'- cUGCGG------------CCCAGgCG-CUGcGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 35655 0.68 0.437305
Target:  5'- gGGCGCCcGGUCUcCGACGUGGUcaacgaggucauccGGGAa -3'
miRNA:   3'- -CUGCGGcCCAGGcGCUGCGCCG--------------CCCU- -5'
11089 5' -65.4 NC_002794.1 + 30967 0.68 0.439781
Target:  5'- gGAUGUCGugacGGUCCucccCGGCGaCGGCGGGGu -3'
miRNA:   3'- -CUGCGGC----CCAGGc---GCUGC-GCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 183677 0.68 0.439781
Target:  5'- aGCGCCgacGGGUcgagcgcccgCCGCG-CGCGGCGGc- -3'
miRNA:   3'- cUGCGG---CCCA----------GGCGCuGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 101578 0.68 0.448088
Target:  5'- -gUGCCGGccgCCGCGGC-CGGgGGGGc -3'
miRNA:   3'- cuGCGGCCca-GGCGCUGcGCCgCCCU- -5'
11089 5' -65.4 NC_002794.1 + 49014 0.68 0.448088
Target:  5'- cGCGCCGcGGcggCCGCGGCGUcguccGGCGcGGu -3'
miRNA:   3'- cUGCGGC-CCa--GGCGCUGCG-----CCGC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.